Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005046 and ABIE53_005047 are separated by 44 nucleotidesABIE53_005047 and ABIE53_005048 are separated by 244 nucleotidesABIE53_005048 and ABIE53_005049 are separated by 156 nucleotidesABIE53_005049 and ABIE53_005050 are separated by 28 nucleotides ABIE53_005046: ABIE53_005046 - uncharacterized protein (DUF305 family), at 1,289,520 to 1,289,933 _005046 ABIE53_005047: ABIE53_005047 - copper chaperone, at 1,289,978 to 1,290,181 _005047 ABIE53_005048: ABIE53_005048 - tetratricopeptide (TPR) repeat protein, at 1,290,426 to 1,292,015 _005048 ABIE53_005049: ABIE53_005049 - NADPH:quinone reductase-like Zn-dependent oxidoreductase, at 1,292,172 to 1,293,179 _005049 ABIE53_005050: ABIE53_005050 - ABC-2 type transport system ATP-binding protein, at 1,293,208 to 1,293,831 _005050
Group Condition ABIE53_005046 ABIE53_005047 ABIE53_005048 ABIE53_005049 ABIE53_005050
motility_chemotaxis Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut N.D. N.D. +0.1 -0.4 -1.5
soil extract D,L-Malic Acid 5 mM in soil extract N.D. N.D. +0.0 -0.5 -1.3
soil extract Sucrose 5 mM in soil extract N.D. N.D. -0.2 -0.7 -0.6
r2a outgrowth control R2A outgrowth control N.D. N.D. +0.2 +0.1 -1.7
carbon source Shikimic Acid 5 mM (C) N.D. N.D. +0.3 -0.8 -0.7
stress R2A with Quartz_sand 500 g/L N.D. N.D. +0.3 -0.4 -1.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. N.D. +0.2 -0.6 -0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.3 -0.4 -0.9
r2a no shaking R2A no shaking N.D. N.D. +0.3 -0.1 -1.0
stress R2A with C30 N.D. N.D. +0.4 -0.2 -0.9
stress R2A with C10-HSL N.D. N.D. +0.1 +0.6 -1.2
stress RCH2_defined_glucose_5mM with Chlorogenic 2 mM N.D. N.D. +0.5 -0.0 -0.9
carbon source Acetylated xylan 10 g/L (C) N.D. N.D. +0.3 -1.5 +0.7
soil extract Indole-3-pyruvic 5 mM in soil extract N.D. N.D. +0.2 +0.6 -1.1
carbon source Azelaic 20 mM (C) N.D. N.D. +0.3 +0.3 -0.9
stress M9 with Chloride 200 mM N.D. N.D. -0.2 -0.6 +0.9
stress RCH2_defined_glucose_5mM with Guanine 5 mM N.D. N.D. +0.1 +0.7 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.6 +0.4 -0.8
carbon source D-Galactose (C) N.D. N.D. +0.4 +0.7 -0.6
stress M9 with Chloride 200 mM N.D. N.D. -0.5 +0.6 +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -0.1 -0.4 +1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. N.D. -0.2 +0.3 +1.0
carbon source Tween 20 (C) N.D. N.D. +0.9 +0.6 -0.3
carbon source D-Gluconic Acid (C) N.D. N.D. +0.5 +0.9 +0.1
carbon source D-Raffinose (C) N.D. N.D. -0.0 +0.7 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -0.0 +0.9 +0.7
carbon source L-Alanine (C) N.D. N.D. +0.0 +0.9 +0.7
carbon source D-Sorbitol (C) N.D. N.D. +0.3 +0.7 +0.8
carbon source D-Glucose (C) N.D. N.D. +0.5 +1.0 +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.4 +0.4 +1.2
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