Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005043 and ABIE53_005044 are separated by 26 nucleotidesABIE53_005044 and ABIE53_005045 are separated by 247 nucleotidesABIE53_005045 and ABIE53_005046 are separated by 24 nucleotidesABIE53_005046 and ABIE53_005047 are separated by 44 nucleotides ABIE53_005043: ABIE53_005043 - iron-sulfur-dependent 2-methylisocitrate dehydratase, at 1,284,996 to 1,287,593 _005043 ABIE53_005044: ABIE53_005044 - putative AcnD-accessory protein PrpF, at 1,287,620 to 1,288,807 _005044 ABIE53_005045: ABIE53_005045 - hypothetical protein, at 1,289,055 to 1,289,495 _005045 ABIE53_005046: ABIE53_005046 - uncharacterized protein (DUF305 family), at 1,289,520 to 1,289,933 _005046 ABIE53_005047: ABIE53_005047 - copper chaperone, at 1,289,978 to 1,290,181 _005047
Group Condition ABIE53_005043 ABIE53_005044 ABIE53_005045 ABIE53_005046 ABIE53_005047
carbon source propionate (C) -3.9 -4.9 N.D. N.D. N.D.
carbon source propionate (C) -4.0 -3.1 N.D. N.D. N.D.
plant outgrowth control Plant outgrowth control -1.1 -4.4 N.D. N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -3.8 N.D. N.D. N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -3.7 N.D. N.D. N.D.
nitrogen source 1-aminocyclopropane-1-carboxylate (ACC) (N) -0.6 -3.0 N.D. N.D. N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -3.2 N.D. N.D. N.D.
r2a no shaking R2A no shaking -0.1 -2.9 N.D. N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -2.4 N.D. N.D. N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -2.5 N.D. N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 -1.6 N.D. N.D. N.D.
stress R2A with N-(3-oxohexanoyl)-DL-homoserine lactone 10 uM +0.1 -2.7 N.D. N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -1.8 N.D. N.D. N.D.
r2a outgrowth control R2A outgrowth control -0.1 -2.5 N.D. N.D. N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.0 -2.5 N.D. N.D. N.D.
r2a outgrowth control R2A outgrowth control -0.1 -2.3 N.D. N.D. N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -1.9 N.D. N.D. N.D.
stress RCH2_defined_glucose_5mM with Pyruvic 5 mM -0.5 -2.0 N.D. N.D. N.D.
stress R2A with Propan-1-ol 13 g/L +0.1 -2.5 N.D. N.D. N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 -2.3 N.D. N.D. N.D.
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.6 -2.0 N.D. N.D. N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.0 -2.0 N.D. N.D. N.D.
carbon source Laminarin 10 g/L (C) -0.5 +2.0 N.D. N.D. N.D.
stress RCH2_defined_glucose_5mM with Adenine 2 mM +0.9 +1.6 N.D. N.D. N.D.
soil extract Adenine 5 mM in soil extract +1.4 +1.5 N.D. N.D. N.D.
stress RCH2_defined_glucose_5mM with Adenine 4 mM +1.3 +1.8 N.D. N.D. N.D.
stress RCH2_defined_glucose_5mM with Adenine 5 mM +1.2 +2.1 N.D. N.D. N.D.
soil extract Adenine 5 mM in soil extract +1.6 +1.9 N.D. N.D. N.D.
stress RCH2_defined_glucose_5mM with Adenine 5 mM +1.8 +1.8 N.D. N.D. N.D.
stress RCH2_defined_glucose_5mM with Adenine 4 mM +1.5 +2.3 N.D. N.D. N.D.
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