Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005040 and ABIE53_005041 overlap by 44 nucleotidesABIE53_005041 and ABIE53_005042 are separated by 215 nucleotidesABIE53_005042 and ABIE53_005043 are separated by 165 nucleotidesABIE53_005043 and ABIE53_005044 are separated by 26 nucleotides ABIE53_005040: ABIE53_005040 - AraC-like DNA-binding protein, at 1,281,102 to 1,281,512 _005040 ABIE53_005041: ABIE53_005041 - propionate catabolism operon transcriptional regulator, at 1,281,469 to 1,283,439 _005041 ABIE53_005042: ABIE53_005042 - 2-methylcitrate synthase, at 1,283,655 to 1,284,830 _005042 ABIE53_005043: ABIE53_005043 - iron-sulfur-dependent 2-methylisocitrate dehydratase, at 1,284,996 to 1,287,593 _005043 ABIE53_005044: ABIE53_005044 - putative AcnD-accessory protein PrpF, at 1,287,620 to 1,288,807 _005044
Group Condition ABIE53_005040 ABIE53_005041 ABIE53_005042 ABIE53_005043 ABIE53_005044
carbon source propionate (C) +0.3 -4.1 -3.3 -3.9 -4.9
carbon source propionate (C) +0.1 -4.2 -4.0 -4.0 -3.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -1.0 -0.6 -0.6 -3.8
plant outgrowth control Plant outgrowth control -0.3 +0.5 -0.7 -1.1 -4.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.0 -2.5 -0.2 -3.2
r2a outgrowth control R2A outgrowth control -0.3 +0.1 -1.7 -0.1 -2.5
nitrogen source 1-aminocyclopropane-1-carboxylate (ACC) (N) +0.2 +0.0 -0.9 -0.6 -3.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.6 -2.2 -1.1 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.2 +0.1 -0.5 -3.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.6 -3.1 +0.1 -0.8
plant outgrowth control Plant outgrowth control +0.3 +0.3 -1.5 -0.2 -1.7
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.5 +0.4 -1.2 +0.6 -2.0
plant outgrowth control Plant outgrowth control -0.2 +0.8 -0.8 -0.2 -2.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.7 +0.3 -1.1 -0.4 -1.9
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.7 -0.3 -0.2 +1.0 -2.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.1 -0.0 -0.9 +0.1 -2.2
carbon source D-Fructose (C) +1.7 -0.3 -1.1 -0.2 -1.5
carbon source L-Rhamnose (C) +1.2 +0.2 -0.8 -0.6 -1.3
carbon source L-Histidine (C) +1.3 -0.2 -1.7 -0.5 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.2 +1.3 -0.4 -1.8
stress RCH2_defined_glucose_5mM with Adenine 5 mM -0.5 -0.1 +0.2 +1.2 +2.1
soil extract Adenine 5 mM in soil extract +0.2 -0.3 +0.2 +1.6 +1.9
stress RCH2_defined_glucose_5mM with Adenine 4 mM +0.2 -0.4 +0.8 +1.3 +1.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +3.4 +0.2 -0.4 -0.1 +1.0
stress RCH2_defined_glucose_5mM with Adenine 5 mM +0.2 +0.6 -0.1 +1.8 +1.8
stress RCH2_defined_glucose_5mM with Adenine 4 mM +0.1 +0.3 +0.3 +1.5 +2.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +3.3 +0.4 -0.1 -0.2 +1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +4.5 -0.2 +0.6 -0.4 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +6.1 -0.0 +0.1 -0.1 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +7.0 -0.4 -0.2 +0.5 -0.9
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