Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005039 and ABIE53_005040 overlap by 4 nucleotidesABIE53_005040 and ABIE53_005041 overlap by 44 nucleotidesABIE53_005041 and ABIE53_005042 are separated by 215 nucleotidesABIE53_005042 and ABIE53_005043 are separated by 165 nucleotides ABIE53_005039: ABIE53_005039 - glycine/D-amino acid oxidase-like deaminating enzyme, at 1,280,512 to 1,281,105 _005039 ABIE53_005040: ABIE53_005040 - AraC-like DNA-binding protein, at 1,281,102 to 1,281,512 _005040 ABIE53_005041: ABIE53_005041 - propionate catabolism operon transcriptional regulator, at 1,281,469 to 1,283,439 _005041 ABIE53_005042: ABIE53_005042 - 2-methylcitrate synthase, at 1,283,655 to 1,284,830 _005042 ABIE53_005043: ABIE53_005043 - iron-sulfur-dependent 2-methylisocitrate dehydratase, at 1,284,996 to 1,287,593 _005043
Group Condition ABIE53_005039 ABIE53_005040 ABIE53_005041 ABIE53_005042 ABIE53_005043
carbon source propionate (C) -0.2 +0.1 -4.2 -4.0 -4.0
carbon source propionate (C) +0.3 +0.3 -4.1 -3.3 -3.9
soil extract Indole-3-pyruvic 5 mM in soil extract -1.6 -0.6 -0.7 -2.2 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.2 -0.6 -2.2 -1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.6 -0.6 -1.2 -0.7
nitrogen source histamine 2mM N source +0.2 -0.0 -0.6 -2.7 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -1.4 +0.2 -1.7 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.5 -1.0 -0.6 -0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.2 +0.6 -3.1 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +0.4 -0.0 -2.5 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -1.8 -0.4 -0.4 +0.4
carbon source L-Histidine (C) -0.2 +1.3 -0.2 -1.7 -0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.3 +0.1 -1.5 -0.5
plant outgrowth control Plant outgrowth control +0.7 -0.3 +0.5 -0.7 -1.1
carbon source D-Sorbitol (C) -0.9 +1.1 -0.5 +0.0 -0.4
carbon source L-Rhamnose (C) -0.6 +1.2 +0.2 -0.8 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.6 +2.2 -0.5 -0.7 +0.2
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.5 -0.5 +0.4 -1.2 +0.6
carbon source D-Galacturonic Acid (C) -0.3 +1.4 -0.2 -0.8 -0.3
soil extract Adenine 5 mM in soil extract -0.9 +0.1 +0.1 -0.3 +1.4
carbon source D-Fructose (C) +0.3 +1.7 -0.3 -1.1 -0.2
carbon source Tween 20 (C) -0.2 +1.8 -0.6 -0.1 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +2.3 -0.1 +0.2 -0.1
stress RCH2_defined_glucose_5mM with Adenine 5 mM -0.4 +0.2 +0.6 -0.1 +1.8
stress RCH2_defined_glucose_5mM with Adenine 4 mM +0.2 +0.2 -0.4 +0.8 +1.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 +3.4 +0.2 -0.4 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 +3.3 +0.4 -0.1 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 +4.5 -0.2 +0.6 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 +6.1 -0.0 +0.1 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +7.0 -0.4 -0.2 +0.5
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