Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_005010 and ABIE53_005011 are separated by 262 nucleotidesABIE53_005011 and ABIE53_005012 are separated by 250 nucleotidesABIE53_005012 and ABIE53_005013 are separated by 132 nucleotidesABIE53_005013 and ABIE53_005014 are separated by 64 nucleotides ABIE53_005010: ABIE53_005010 - succinate-semialdehyde dehydrogenase/glutarate-semialdehyde dehydrogenase, at 1,247,963 to 1,249,435 _005010 ABIE53_005011: ABIE53_005011 - DNA-binding LacI/PurR family transcriptional regulator, at 1,249,698 to 1,250,714 _005011 ABIE53_005012: ABIE53_005012 - multiple sugar transport system ATP-binding protein, at 1,250,965 to 1,252,104 _005012 ABIE53_005013: ABIE53_005013 - multiple sugar transport system substrate-binding protein, at 1,252,237 to 1,253,490 _005013 ABIE53_005014: ABIE53_005014 - multiple sugar transport system permease protein, at 1,253,555 to 1,254,460 _005014
Group Condition ABIE53_005010 ABIE53_005011 ABIE53_005012 ABIE53_005013 ABIE53_005014
carbon source Pectin 10 g/L (C) -0.2 +2.4 -3.4 -2.7 -3.2
carbon source Pectin 10 g/L (C) -0.4 +2.6 -2.5 -3.7 -2.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.1 +0.3 +0.3 +0.2 -0.8
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.7 -0.7 +0.4 -1.6 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -1.8 -0.5 +0.0 +0.1
stress RCH2_defined_glucose_5mM with Adenine 4 mM -0.3 -0.9 -0.4 -0.2 -0.3
plant outgrowth control Plant outgrowth control -0.4 -0.3 -0.6 -1.0 +0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.4 -0.9 -0.1 +0.2 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.7 +0.4 -0.0 -0.2 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.3 +0.8 -0.2 -0.4 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 +1.4 -0.4 -0.1 -0.9
stress RCH2_defined_glucose_5mM with Sucrose 5 mM -0.8 +0.4 +0.4 +0.3 -1.0
carbon source Cinnamic and Ethanols -0.2 +0.5 -0.4 +0.2 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 +1.0 -0.1 -0.3 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.0 +0.7 +0.2 +0.3 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 +1.0 +0.3 +0.1 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.9 +0.2 -1.1 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.4 +0.8 +0.3 -0.4 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.5 +0.5 -0.4 -0.3
carbon source Acetylated xylan 10 g/L (C) +0.3 +0.5 +0.2 +0.6 -1.5
nitrogen source histamine 5mM N source -0.2 +0.8 -0.7 +0.3 -0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.4 +0.5 +0.8 +1.0 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +1.7 +0.6 -0.4 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +1.8 -0.3 -0.0 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +2.1 +0.5 -0.6 -0.5
soil extract Sucrose 5 mM in soil extract +0.3 +1.9 +0.2 -0.3 -0.4
soil extract Sucrose 5 mM in soil extract -0.1 +1.8 +0.3 +0.1 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +1.3 +0.3 +0.5 -0.6
soil extract Lumazine 5 mM in soil extract +0.7 +1.2 +0.2 -0.1 +0.2
carbon source Beta-Lactose (C) +0.1 +6.8 +0.4 -0.2 -0.2
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