Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004988 and ABIE53_004989 are separated by 50 nucleotidesABIE53_004989 and ABIE53_004990 are separated by 210 nucleotidesABIE53_004990 and ABIE53_004991 are separated by 147 nucleotidesABIE53_004991 and ABIE53_004992 are separated by 22 nucleotides ABIE53_004988: ABIE53_004988 - D-galactonate transporter, at 1,225,649 to 1,226,977 _004988 ABIE53_004989: ABIE53_004989 - NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family), at 1,227,028 to 1,227,777 _004989 ABIE53_004990: ABIE53_004990 - DNA-binding transcriptional LysR family regulator, at 1,227,988 to 1,228,965 _004990 ABIE53_004991: ABIE53_004991 - 16S rRNA C1402 (ribose-2'-O) methylase RsmI, at 1,229,113 to 1,229,340 _004991 ABIE53_004992: ABIE53_004992 - ATP-binding cassette subfamily B protein, at 1,229,363 to 1,231,192 _004992
Group Condition ABIE53_004988 ABIE53_004989 ABIE53_004990 ABIE53_004991 ABIE53_004992
stress RCH2_defined_glucose_5mM with Serotonin 5 mM -0.8 -0.8 -0.3 N.D. -0.3
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.5 -0.7 -0.4 N.D. -0.4
carbon source L-Asparagine (C) -0.3 -0.9 -0.2 N.D. -0.5
stress control RCH2_defined_glucose_5mM with no stress -0.4 -0.3 -0.2 N.D. -0.9
carbon source L-Asparagine (C) -1.1 -0.7 -0.1 N.D. +0.1
carbon source Tween 20 (C) -0.9 -0.5 +0.2 N.D. -0.6
carbon source Acetylated xylan 10 g/L (C) +0.4 -1.6 -0.4 N.D. +0.0
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 -0.4 +0.3 N.D. -0.1
stress RCH2_defined_glucose_5mM with caffeic 0.5 mM -0.3 -0.9 +0.2 N.D. -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.6 -0.5 N.D. -0.6
carbon source D-Sorbitol (C) -0.8 -0.6 +0.2 N.D. -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 -0.2 +0.3 N.D. -0.6
stress R2A with Ethanol 2.5 vol% -1.3 -0.4 +0.3 N.D. +0.0
stress RCH2_defined_glucose_5mM with Sucrose 5 mM -0.0 -0.9 +0.2 N.D. -0.6
carbon source L-Rhamnose (C) -1.0 -0.8 +0.4 N.D. +0.3
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 -1.0 -0.5 N.D. +0.3
carbon source Uridine (C) -0.7 -0.7 +0.2 N.D. +0.3
carbon source D-Sorbitol (C) -0.9 -0.2 +0.5 N.D. -0.2
stress RCH2_defined_glucose_5mM with caffeic 1 mM +0.7 -0.6 -0.3 N.D. -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -0.2 +0.6 N.D. -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.3 -1.3 -0.0 N.D. -0.4
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.8 -0.3 -0.8 N.D. +0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.2 +0.4 -0.2 N.D. -1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.2 -0.0 -0.3 N.D. -0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.3 +0.5 +0.4 N.D. -0.7
stress RCH2_defined_glucose_5mM with Sucrose 5 mM +0.9 +0.3 +0.1 N.D. -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 +0.6 +0.2 N.D. +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.7 -0.5 -0.3 N.D. +0.7
plant outgrowth control Plant outgrowth control -0.5 -0.0 +0.7 N.D. +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.1 -1.0 +0.1 N.D. +0.7
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