Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_004975	ABIE53_004976	ABIE53_004977	ABIE53_004978	ABIE53_004979
carbon source	Acetylated xylan 10 g/L (C)	-0.6	-1.7	-0.3	+0.3	+0.1
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	-0.2	-1.7	-0.3	+0.0	-0.1
carbon source	L-Rhamnose (C)	-0.0	-1.7	-0.1	-0.4	+0.0
carbon source	Adenosine (C)	-0.3	-1.1	-0.3	-0.2	-0.1
carbon source	2-Deoxy-D-Ribose (C)	+0.0	-1.7	+0.1	-0.1	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.4	-2.1	+0.2	+0.3	+0.2
stress	RCH2_defined_glucose_5mM with Adenine 4 mM	-0.1	-1.1	+0.1	-0.4	-0.1
carbon source	Laminarin 10 g/L (C)	-0.1	-1.2	-0.2	+0.2	-0.1
r2a outgrowth control	R2A outgrowth control	-0.3	-0.8	+0.2	-0.2	-0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.0	-1.2	+0.6	-0.2	-0.4
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.6	-1.9	-0.0	+0.0	+0.2
stress	R2A with Quartz_sand 500 g/L	+0.1	-1.0	-0.2	+0.3	-0.3
stress	R2A with 3-methyl-3-butenol 4.5 g/L	+0.3	-1.1	-0.1	+0.1	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.5	-1.0	-0.4	-0.1	-0.1
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.3	-1.8	+0.4	+0.5	-0.3
plant outgrowth control	Plant outgrowth control	-0.3	-0.6	+0.1	+0.4	-0.5
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.2	-0.9	-0.1	+0.4	-0.4
plant outgrowth control	Plant outgrowth control	-0.2	-1.2	+0.1	+0.5	+0.1
stress	Growth in presence of limonene	+0.2	-1.0	-0.2	+0.6	-0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.4	-0.9	+0.2	-0.4	+0.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.4	-0.7	+0.4	+0.5	+0.6
carbon source	D-Raffinose (C)	+0.2	+0.8	+0.2	-0.7	-0.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.6	+0.9	+0.1	+0.1	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.2	+1.2	+0.1	+0.3	+0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.3	+1.5	-0.0	+0.4	-0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.7	+1.0	+0.2	+0.6	+0.5
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+1.0	+0.4	+0.1	+0.2	+0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.0	+1.6	+0.1	+0.7	-0.1
soil extract	Indole-3-pyruvic 5 mM in soil extract	+0.3	+1.6	+0.3	+0.7	+0.1
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	+3.3	+0.4	+0.1	+0.3