Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004957 and ABIE53_004958 are separated by 22 nucleotidesABIE53_004958 and ABIE53_004959 are separated by 261 nucleotidesABIE53_004959 and ABIE53_004960 are separated by 121 nucleotidesABIE53_004960 and ABIE53_006573 are separated by 748 nucleotides ABIE53_004957: ABIE53_004957 - uncharacterized protein YfaP (DUF2135 family), at 1,183,536 to 1,184,429 _004957 ABIE53_004958: ABIE53_004958 - uncharacterized protein YfaP (DUF2135 family), at 1,184,452 to 1,185,249 _004958 ABIE53_004959: ABIE53_004959 - hypothetical protein, at 1,185,511 to 1,185,876 _004959 ABIE53_004960: ABIE53_004960 - RNA polymerase primary sigma factor, at 1,185,998 to 1,187,992 _004960 ABIE53_006573: ABIE53_006573 - 16S ribosomal RNA, at 1,188,741 to 1,190,273 _006573
Group Condition ABIE53_004957 ABIE53_004958 ABIE53_004959 ABIE53_004960 ABIE53_006573
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -0.5 -0.1 -0.5 -2.9 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.1 -0.2 -3.1 N.D.
stress R2A with Propan-1-ol 13 g/L -0.5 -0.1 -0.2 -2.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.3 +0.4 -0.7 -2.7 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 +0.2 -0.4 -1.2 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.0 -0.3 -1.8 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.2 -0.2 +0.1 -2.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.0 +0.1 -2.8 N.D.
motility_chemotaxis Motility_chemotaxis, R2A; outer cut +0.4 +0.1 +0.0 -2.4 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +0.1 -0.5 -2.3 N.D.
stress R2A with Quartz_sand 500 g/L +0.2 +0.1 -0.4 -1.9 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +0.0 +0.1 -2.5 N.D.
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.2 +0.5 -2.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.2 -0.1 -1.8 N.D.
stress R2A with Quartz_sand 500 g/L +0.3 +0.3 +0.2 -1.9 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +0.1 +0.0 -1.7 N.D.
carbon source D-Lactate (C) +0.6 -0.1 +0.5 -1.7 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.6 -0.2 +0.4 -1.5 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.9 +0.2 -0.4 -1.1 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.0 -0.2 +0.6 -1.3 N.D.
stress RCH2_defined_glucose_5mM with caffeic 1 mM +0.9 +0.1 +0.1 +1.4 N.D.
carbon source D-Glucuronic Acid (C) +0.7 +0.3 +0.9 +0.7 N.D.
carbon source D-Mannose (C) +1.0 -0.0 +0.5 +1.2 N.D.
carbon source D-Galactose (C) +0.9 +0.0 +0.8 +0.9 N.D.
carbon source D-Glucose-6-Phosphate (C) +0.9 +0.2 +1.0 +0.5 N.D.
carbon source L-Histidine (C) +0.7 +0.0 +0.8 +1.0 N.D.
carbon source m-Inositol (C) +1.1 +0.2 +0.9 +0.6 N.D.
carbon source D-Gluconic Acid (C) +0.9 +0.0 +1.0 +0.9 N.D.
stress RCH2_defined_glucose_5mM with caffeic 1 mM +0.7 -0.0 +0.4 +1.7 N.D.
carbon source D-Fructose (C) +1.0 +0.2 +1.3 +1.1 N.D.
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