Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004834 and ABIE53_004835 are separated by 99 nucleotidesABIE53_004835 and ABIE53_004836 are separated by 79 nucleotidesABIE53_004836 and ABIE53_004837 are separated by 94 nucleotidesABIE53_004837 and ABIE53_004838 are separated by 1 nucleotides ABIE53_004834: ABIE53_004834 - DNA-binding transcriptional LysR family regulator, at 1,052,254 to 1,053,105 _004834 ABIE53_004835: ABIE53_004835 - phenylpyruvate tautomerase PptA (4-oxalocrotonate tautomerase family), at 1,053,205 to 1,053,588 _004835 ABIE53_004836: ABIE53_004836 - molybdate transport system regulatory protein, at 1,053,668 to 1,054,504 _004836 ABIE53_004837: ABIE53_004837 - molybdate transport system ATP-binding protein, at 1,054,599 to 1,055,300 _004837 ABIE53_004838: ABIE53_004838 - molybdate transport system permease protein, at 1,055,302 to 1,055,976 _004838
Group Condition ABIE53_004834 ABIE53_004835 ABIE53_004836 ABIE53_004837 ABIE53_004838
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.4 +0.4 +0.2 -3.4 -4.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.1 +0.3 +0.1 -3.9 -2.7
soil extract Indole-3-pyruvic 5 mM in soil extract -3.0 +0.2 +0.1 -1.5 -1.5
stress RCH2_defined_glucose_5mM with Adenine 5 mM -2.6 -0.0 +0.2 -1.9 -1.2
carbon source L-Tryptophan (C) -4.0 -0.1 -0.4 -0.3 -0.6
soil extract Adenine 5 mM in soil extract -2.9 -0.2 -0.1 -1.0 -1.0
stress RCH2_defined_glucose_5mM with Adenine 2 mM -1.5 +0.4 -0.2 -1.7 -2.0
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -3.5 +0.2 -0.0 -1.0 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -3.1 +0.3 -0.0 -0.9 -0.9
stress RCH2_defined_glucose_5mM with Adenine 4 mM -1.6 -0.2 +0.4 -1.7 -1.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.9 +0.5 +0.2 -1.4 -2.1
carbon source D-Glucosamine Hydrochloride (C) -3.6 -0.1 -0.2 -0.9 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.2 +0.0 -0.4 -0.9 -0.7
stress RCH2_defined_glucose_5mM with Adenine 2 mM +0.7 -0.1 -0.2 -2.1 -2.3
phage Burk2_10 -4.2 +0.0 -0.1 +0.0 +0.2
stress RCH2_defined_glucose_5mM with Sucrose 5 mM -2.5 -0.4 -0.0 -0.5 -0.5
stress R2A with Ethanol 2.5 vol% -3.6 +0.2 -0.3 -0.2 -0.2
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.2 -0.2 +0.3 -0.6 -1.2
stress R2A with Ethanol 2.5 vol% -2.9 -0.2 -0.2 -0.5 -0.1
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 0.5 mM -3.2 +0.3 -0.3 -0.3 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.3 +0.6 -0.0 -3.0 -2.4
stress RCH2_defined_glucose_5mM with Adenine 5 mM +0.9 -0.1 +0.1 -2.2 -1.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.3 -0.1 +0.1 -2.8 -1.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 +0.6 -0.3 -1.5 -1.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.1 +0.5 -0.3 -0.1 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +2.7 +0.7 +0.2 -2.5 -2.9
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM +2.2 +0.3 +0.4 -1.3 -0.7
soil extract Lumazine 5 mM in soil extract +1.6 +0.4 -0.1 +0.8 +1.0
stress RCH2_defined_glucose_5mM with Lumazine 5 mM +1.5 +0.4 +0.0 +1.1 +0.9
stress RCH2_defined_glucose_5mM with Lumazine 5 mM +1.8 -0.1 -0.2 +1.2 +1.4
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ABIE53_004834
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ABIE53_004835
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ABIE53_004838
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