Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004818 and ABIE53_004819 are separated by 45 nucleotidesABIE53_004819 and ABIE53_004820 are separated by 185 nucleotidesABIE53_004820 and ABIE53_004821 are separated by 128 nucleotidesABIE53_004821 and ABIE53_004822 are separated by 20 nucleotides ABIE53_004818: ABIE53_004818 - AraC-like DNA-binding protein, at 1,026,041 to 1,026,835 _004818 ABIE53_004819: ABIE53_004819 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA, at 1,026,881 to 1,027,222 _004819 ABIE53_004820: ABIE53_004820 - K+-sensing histidine kinase KdpD, at 1,027,408 to 1,028,220 _004820 ABIE53_004821: ABIE53_004821 - CBS domain containing-hemolysin-like protein, at 1,028,349 to 1,029,689 _004821 ABIE53_004822: ABIE53_004822 - (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase, at 1,029,710 to 1,032,565 _004822
Group Condition ABIE53_004818 ABIE53_004819 ABIE53_004820 ABIE53_004821 ABIE53_004822
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.1 -1.0 +1.8 -0.4 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -1.6 +2.3 -0.6 +0.4
stress RCH2_defined_glucose_5mM with Serotonin 5 mM +0.3 +0.0 +2.8 -1.1 -0.5
stress RCH2_defined_glucose_5mM with caffeic 1 mM +0.1 +0.5 +2.9 -1.3 -0.4
stress RCH2_defined_glucose_5mM with caffeic 0.5 mM +0.7 +0.0 +2.6 -1.4 -0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.3 +1.2 +1.8 +0.3 -0.0
stress RCH2_defined_glucose_5mM with Serotonin 5 mM +0.4 +0.3 +2.8 -1.1 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -0.5 +4.2 -0.0 -0.4
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM -0.0 -0.9 +4.5 -0.5 -0.4
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM -0.1 -0.7 +4.8 -0.5 -0.4
stress RCH2_defined_glucose_5mM with caffeic 1 mM +0.2 +0.4 +3.0 -0.7 +0.1
carbon source Acetylated xylan 10 g/L (C) -0.2 +1.0 +3.0 -0.8 +0.2
stress RCH2_defined_glucose_5mM with Lumazine 5 mM +0.1 +0.9 +2.9 -0.3 -0.3
carbon source 4-Hydroxybenzoic Acid (C) +0.4 -0.1 +3.9 -0.5 -0.1
carbon source 4-Hydroxybenzoic Acid (C) +0.2 +0.1 +3.8 -0.3 -0.2
carbon source Acetylated xylan 10 g/L (C) +0.4 +1.0 +2.7 -0.5 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.8 +4.8 -0.1 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.4 +5.1 +0.0 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.4 +4.0 -0.5 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.3 +4.6 +0.4 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.0 +4.4 +0.3 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 +0.1 +5.7 -0.1 +0.4
carbon source Glucuronamide (C) +0.3 -0.1 +4.4 +0.2 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +0.1 +4.3 +0.3 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.5 +4.1 -0.0 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.3 +5.1 -0.2 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -0.0 +5.3 +0.3 +0.6
carbon source Glucuronamide (C) +0.7 +1.1 +4.0 +0.3 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.3 +6.2 -0.3 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.1 +8.6 +0.5 -0.1
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ABIE53_004818
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ABIE53_004819
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ABIE53_004821
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ABIE53_004822
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