Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004767 and ABIE53_004768 are separated by 30 nucleotidesABIE53_004768 and ABIE53_004769 are separated by 85 nucleotidesABIE53_004769 and ABIE53_004770 are separated by 72 nucleotidesABIE53_004770 and ABIE53_004771 are separated by 163 nucleotides ABIE53_004767: ABIE53_004767 - succinate dehydrogenase / fumarate reductase flavoprotein subunit, at 971,196 to 972,971 _004767 ABIE53_004768: ABIE53_004768 - succinate dehydrogenase / fumarate reductase iron-sulfur subunit, at 973,002 to 973,706 _004768 ABIE53_004769: ABIE53_004769 - antitoxin CptB, at 973,792 to 974,064 _004769 ABIE53_004770: ABIE53_004770 - citrate synthase, at 974,137 to 975,438 _004770 ABIE53_004771: ABIE53_004771 - AraC-like DNA-binding protein, at 975,602 to 976,864 _004771
Group Condition ABIE53_004767 ABIE53_004768 ABIE53_004769 ABIE53_004770 ABIE53_004771
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. N.D. N.D. -0.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. N.D. N.D. -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. N.D. N.D. -0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. N.D. N.D. -0.3
carbon source Acetylated xylan 10 g/L (C) N.D. N.D. N.D. N.D. -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. N.D. N.D. -0.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. N.D. N.D. N.D. -0.3
carbon source Shikimic Acid 5 mM (C) N.D. N.D. N.D. N.D. -0.3
stress RCH2_defined_glucose_5mM with Adenine 5 mM N.D. N.D. N.D. N.D. -0.3
carbon source D-Sorbitol (C) N.D. N.D. N.D. N.D. -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. N.D. N.D. -0.2
nitrogen source histamine 2mM N source N.D. N.D. N.D. N.D. -0.2
plant outgrowth control Plant outgrowth control N.D. N.D. N.D. N.D. -0.2
stress RCH2_defined_glucose_5mM with Adenine 5 mM N.D. N.D. N.D. N.D. -0.2
carbon source D-Glucuronic Acid (C) N.D. N.D. N.D. N.D. +0.2
stress Growth in presence of pinene N.D. N.D. N.D. N.D. +0.3
carbon source D-Lactate (C) N.D. N.D. N.D. N.D. +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. N.D. N.D. +0.3
carbon source Pectin 10 g/L (C) N.D. N.D. N.D. N.D. +0.3
carbon source Citric Acid (C) N.D. N.D. N.D. N.D. +0.3
stress RCH2_defined_glucose_5mM with caffeic 1 mM N.D. N.D. N.D. N.D. +0.3
mixed community Mixed culture; Alteromonas stellipolaris PQQ42 1:1 starting OD to Burkholderia N.D. N.D. N.D. N.D. +0.3
stress RCH2_defined_glucose_5mM with Lumichrome 5 mM N.D. N.D. N.D. N.D. +0.3
carbon source L-Tryptophan (C) N.D. N.D. N.D. N.D. +0.3
motility_chemotaxis Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut N.D. N.D. N.D. N.D. +0.3
biofilm biofilm; planktonic cells from 96 well plate assay in R2A N.D. N.D. N.D. N.D. +0.3
stress R2A with Isopropyl alcohol 21 g/L N.D. N.D. N.D. N.D. +0.4
stress Growth in presence of limonene N.D. N.D. N.D. N.D. +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. N.D. N.D. +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. N.D. N.D. +0.5
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