Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004749 and ABIE53_004750 are separated by 105 nucleotidesABIE53_004750 and ABIE53_004751 are separated by 117 nucleotidesABIE53_004751 and ABIE53_004752 are separated by 15 nucleotidesABIE53_004752 and ABIE53_004753 are separated by 154 nucleotides ABIE53_004749: ABIE53_004749 - putative spermidine/putrescine transport system ATP-binding protein, at 952,406 to 953,524 _004749 ABIE53_004750: ABIE53_004750 - putative spermidine/putrescine transport system substrate-binding protein, at 953,630 to 954,679 _004750 ABIE53_004751: ABIE53_004751 - putative spermidine/putrescine transport system permease protein, at 954,797 to 956,074 _004751 ABIE53_004752: ABIE53_004752 - putative spermidine/putrescine transport system permease protein, at 956,090 to 956,929 _004752 ABIE53_004753: ABIE53_004753 - OOP family OmpA-OmpF porin, at 957,084 to 958,145 _004753
Group Condition ABIE53_004749 ABIE53_004750 ABIE53_004751 ABIE53_004752 ABIE53_004753
carbon source Glucuronamide (C) -0.8 -0.1 -0.0 +0.3 -0.7
soil extract Indole-3-pyruvic 5 mM in soil extract +0.3 +0.3 +0.1 -0.2 -1.1
carbon source L-Proline (C) +0.3 -0.6 -0.3 +0.6 -0.5
plant outgrowth control Plant outgrowth control +0.6 -0.3 -0.3 -0.2 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.1 +0.4 +0.7 -0.4
lb_dap plate control LB_DAP agar plate, outgrowth in LB +0.1 -0.4 -0.2 +0.3 +0.8
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.2 +0.6 -0.7 +0.7 +0.3
carbon source D-Galactose (C) +0.2 -0.3 -0.1 +0.6 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.4 -0.4 +0.1 +0.3 +0.6
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -0.3 +0.5 +0.3 +0.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.6 +0.5 +0.3 +0.7 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.1 +0.6 +0.2 +0.3 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.4 +0.5 +0.7 +0.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +0.6 +0.8 +0.7 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +0.7 +0.5 +1.0 -0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +0.9 +0.8 +0.8 +0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.6 +1.0 +0.7 +0.7 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +1.0 +1.2 +0.8 -0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.8 +1.2 +0.9 +1.1 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.4 +1.4 +1.3 +1.6 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.3 +2.3 +1.3 +2.1 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.5 +1.9 +2.0 +1.6 +0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.5 +2.1 +1.4 +2.2 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.5 +2.1 +2.3 +1.9 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.7 +1.7 +1.8 +2.0 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.9 +2.1 +2.3 +1.8 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.5 +2.6 +1.5 +2.8 -0.0
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.8 +2.0 +2.1 +2.1 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.8 +2.6 +2.0 +3.1 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +2.0 +2.9 +2.9 +2.5 +0.4
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