Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004713 and ABIE53_004714 are separated by 62 nucleotidesABIE53_004714 and ABIE53_004715 overlap by 4 nucleotidesABIE53_004715 and ABIE53_004716 are separated by 65 nucleotidesABIE53_004716 and ABIE53_004717 are separated by 558 nucleotides ABIE53_004713: ABIE53_004713 - 5,6,7,8-tetrahydromethanopterin hydro-lyase, at 904,666 to 905,190 _004713 ABIE53_004714: ABIE53_004714 - aryl-alcohol dehydrogenase-like predicted oxidoreductase, at 905,253 to 906,290 _004714 ABIE53_004715: ABIE53_004715 - succinate-semialdehyde dehydrogenase/glutarate-semialdehyde dehydrogenase, at 906,287 to 907,726 _004715 ABIE53_004716: ABIE53_004716 - putative MFS transporter, at 907,792 to 909,174 _004716 ABIE53_004717: ABIE53_004717 - peptide chain release factor 3, at 909,733 to 911,334 _004717
Group Condition ABIE53_004713 ABIE53_004714 ABIE53_004715 ABIE53_004716 ABIE53_004717
carbon source D,L-Malic Acid (C) -0.7 -0.1 -0.8 -0.2 +0.2
stress RCH2_defined_glucose_5mM with Sucrose 5 mM -1.1 +0.2 -0.1 +0.3 -0.5
plant outgrowth control Plant outgrowth control -0.6 -0.3 +0.5 -0.8 +0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 +0.3 -0.4 -0.5 -0.6
carbon source Glucuronamide (C) -0.1 +0.1 -0.6 -0.7 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.5 +0.2 +0.6 +0.4 -0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 +0.1 +0.5 +0.6 -0.7
soil extract Indole-3-pyruvic 5 mM in soil extract +0.2 -0.5 -0.6 +0.1 +0.4
carbon source Acetylated xylan 10 g/L (C) -0.9 -0.3 -0.0 +0.3 +0.5
carbon source D-Galacturonic Acid (C) -1.0 +0.2 -0.1 +0.6 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.1 +0.8 -0.4 -0.3
phage Burk2_10 -0.1 -0.3 -0.1 -0.6 +1.0
carbon source D-Fructose (C) -0.4 +0.2 -0.4 +0.4 +0.2
carbon source D-Mannose (C) +0.1 +0.1 -0.8 +0.7 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.0 -0.6 +0.4 +0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.1 +0.6 +0.5 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +0.2 -0.3 -0.4 +0.5
carbon source D-Glucuronic Acid (C) -0.4 +0.1 +0.2 +0.7 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.1 +0.6 -0.3 -0.9 +0.5
carbon source D-Galacturonic Acid (C) -0.4 +0.3 +0.2 +0.7 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +0.0 -0.3 +1.4 -0.2
carbon source D-Glucose (C) +0.4 +0.3 -0.6 +0.6 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +0.4 +0.2 -0.3 -0.0
carbon source Acetylated xylan 10 g/L (C) +0.5 +0.0 -0.3 +0.5 +0.4
carbon source Tween 20 (C) -0.4 +0.5 +0.2 +0.5 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.4 +0.5 -0.2 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.0 +0.4 +0.2 -0.2 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 -0.3 +0.6 +0.2 +0.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.8 +0.2 +0.5 +0.2 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +0.5 +0.7 +0.3 +0.3
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