Fitness for 5 genes in Paraburkholderia graminis OAS925

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 488 experiments or choose conditions or try the comparative fitness browser

500 ntABIE53_004711 and ABIE53_004712 are separated by 126 nucleotidesABIE53_004712 and ABIE53_004713 are separated by 598 nucleotidesABIE53_004713 and ABIE53_004714 are separated by 62 nucleotidesABIE53_004714 and ABIE53_004715 overlap by 4 nucleotides ABIE53_004711: ABIE53_004711 - CubicO group peptidase (beta-lactamase class C family), at 902,451 to 903,650 _004711 ABIE53_004712: ABIE53_004712 - DNA-binding protein H-NS, at 903,777 to 904,067 _004712 ABIE53_004713: ABIE53_004713 - 5,6,7,8-tetrahydromethanopterin hydro-lyase, at 904,666 to 905,190 _004713 ABIE53_004714: ABIE53_004714 - aryl-alcohol dehydrogenase-like predicted oxidoreductase, at 905,253 to 906,290 _004714 ABIE53_004715: ABIE53_004715 - succinate-semialdehyde dehydrogenase/glutarate-semialdehyde dehydrogenase, at 906,287 to 907,726 _004715
Group Condition ABIE53_004711 ABIE53_004712 ABIE53_004713 ABIE53_004714 ABIE53_004715
plant outgrowth control Plant outgrowth control -0.2 -1.2 -0.6 -0.0 -0.4
stress RCH2_defined_glucose_5mM with Salicylic 5 mM +0.3 -1.1 -0.3 -0.1 -0.6
stress RCH2_defined_glucose_5mM with Epiandrosterone 5 mM +0.2 -1.6 -0.2 +0.0 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -1.2 -1.0 +0.1 +0.5
carbon source D-Mannose (C) +0.5 -1.1 +0.1 +0.1 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 -1.6 -0.2 -0.0 -0.1
stress RCH2_defined_glucose_5mM with Adenine 2 mM +0.5 -1.6 -0.1 +0.2 -0.1
stress RCH2_defined_glucose_5mM with Adenine 5 mM +0.4 -1.4 +0.4 -0.1 -0.2
carbon source butyrate (C) +0.1 +1.0 -0.5 -0.3 -0.5
carbon source D,L-Malic Acid (C) +0.2 +1.1 -0.7 -0.1 -0.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +1.1 +0.1 +0.0 -0.9
nitrogen source histamine 2mM N source +0.1 +1.3 -0.3 -0.1 -0.7
carbon source D-Lactate (C) +0.3 +1.2 -0.1 -0.2 -0.7
soil extract Indole-3-pyruvic 5 mM in soil extract +0.4 +1.0 +0.2 -0.5 -0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.6 -1.5 +0.2 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -1.1 +1.1 +0.6 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.7 +0.7 -0.3 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.8 +0.2 +0.4 +0.5
carbon source D-Glucuronic Acid (C) -0.4 +1.3 -0.4 +0.1 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 -0.4 +0.7 +0.2 -0.3
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.8 +0.5 +0.4 -0.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.2 +1.3 +0.2 +0.3 -0.4
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.4 +1.3 +0.2 +0.1 -0.3
carbon source D-Fructose (C) -0.5 +1.4 +0.2 +0.2 +0.6
carbon source D-Gluconic Acid (C) +0.5 +1.4 -0.2 +0.2 +0.2
carbon source 4-Hydroxybenzoic Acid (C) +0.1 +1.2 +0.4 +0.3 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +1.5 +0.7 +0.4 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.8 +0.3 +0.2 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +0.8 +1.0 +0.4 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.5 +0.7 +0.5 +0.7
remove
ABIE53_004711
plot		 remove
ABIE53_004712
plot		 remove
ABIE53_004713		 remove
ABIE53_004714
plot		 remove
ABIE53_004715
plot