Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004691 and ABIE53_004692 are separated by 3 nucleotidesABIE53_004692 and ABIE53_004693 are separated by 40 nucleotidesABIE53_004693 and ABIE53_004694 are separated by 35 nucleotidesABIE53_004694 and ABIE53_004695 are separated by 171 nucleotides ABIE53_004691: ABIE53_004691 - ACS family glucarate transporter-like MFS transporter, at 873,673 to 874,959 _004691 ABIE53_004692: ABIE53_004692 - 2-keto-4-pentenoate hydratase, at 874,963 to 875,748 _004692 ABIE53_004693: ABIE53_004693 - FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase, at 875,789 to 878,809 _004693 ABIE53_004694: ABIE53_004694 - AraC family transcriptional regulator, at 878,845 to 879,765 _004694 ABIE53_004695: ABIE53_004695 - drug/metabolite transporter (DMT)-like permease, at 879,937 to 880,848 _004695
Group Condition ABIE53_004691 ABIE53_004692 ABIE53_004693 ABIE53_004694 ABIE53_004695
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.2 -0.7 -0.2 -0.3 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.3 -0.8 -0.3 +0.1
carbon source L-Tryptophan (C) +0.3 -0.6 -0.4 -0.1 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.7 +0.3 -0.3 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.3 -0.7 -0.7 -0.3
carbon source L-Alanine (C) +0.2 -0.3 -0.7 -0.1 +0.1
stress RCH2_defined_glucose_5mM with Adenine 2 mM +0.5 -0.3 -0.2 -0.4 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.3 -0.4 -0.6 +0.4
stress RCH2_defined_glucose_5mM with Adenine 4 mM +0.6 -0.1 -0.3 -0.3 -0.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.2 +0.7 -0.2 -0.5 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.2 +0.5 -0.5 +0.0 -0.4
carbon source Glucuronamide (C) +0.5 +0.2 -0.3 -0.3 -0.2
stress RCH2_defined_glucose_5mM with caffeic 1 mM +0.5 +0.2 -0.3 -0.2 -0.4
carbon source Xylitol (C) +0.6 -0.4 -0.2 -0.2 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.2 +0.3 -0.8 -0.0
carbon source Tween 20 (C) +1.0 -0.3 -0.1 -0.3 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.0 -0.5 -0.5 +0.1 +0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.5 -0.8 +0.5 +0.3 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.3 -0.1 -0.5 +0.2
stress R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM +0.6 -0.4 +0.1 +0.2 -0.1
carbon source Acetylated xylan 10 g/L (C) +0.4 +0.6 -0.4 +0.4 -0.5
carbon source m-Inositol (C) +0.7 -0.3 +0.1 -0.3 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.3 +0.8 -0.3 +0.1 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.6 -0.2 -0.1 -0.2
plant outgrowth control Plant outgrowth control +0.6 +0.6 +0.0 -0.3 -0.2
carbon source D-Mannose (C) +1.1 -0.0 -0.3 +0.3 -0.1
carbon source D-Galactose (C) +0.9 -0.2 +0.3 -0.1 +0.1
carbon source D-Gluconic Acid (C) +0.9 +0.3 +0.2 -0.3 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.5 +0.4 -0.2 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +0.5 +0.9 +0.2 +0.3
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