Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004647 and ABIE53_004648 are separated by 4 nucleotidesABIE53_004648 and ABIE53_004649 are separated by 210 nucleotidesABIE53_004649 and ABIE53_004650 overlap by 4 nucleotidesABIE53_004650 and ABIE53_004651 overlap by 8 nucleotides ABIE53_004647: ABIE53_004647 - squalene-associated FAD-dependent desaturase, at 832,680 to 833,975 _004647 ABIE53_004648: ABIE53_004648 - squalene synthase HpnD, at 833,980 to 834,828 _004648 ABIE53_004649: ABIE53_004649 - diguanylate cyclase (GGDEF)-like protein, at 835,039 to 835,977 _004649 ABIE53_004650: ABIE53_004650 - chemotaxis protein CheC, at 835,974 to 836,597 _004650 ABIE53_004651: ABIE53_004651 - CheY-like chemotaxis protein, at 836,590 to 836,958 _004651
Group Condition ABIE53_004647 ABIE53_004648 ABIE53_004649 ABIE53_004650 ABIE53_004651
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -1.8 -1.5 -5.2 -1.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -2.7 -0.6 -2.8 -1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -1.5 -1.0 -1.7 -1.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -3.0 -0.7 -0.8 -1.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -3.8 -0.8 -0.5 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -3.5 -0.7 -0.5 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -2.9 -0.6 -0.9 -1.0
stress R2A with 3-methyl-3-butenol 4.5 g/L -0.3 -4.1 -0.2 -0.5 -0.6
biofilm biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound -0.5 -1.6 -0.8 -1.7 -0.6
stress R2A with 3-methyl-3-butenol 4.5 g/L -0.4 -4.3 -0.1 -0.4 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -1.1 -1.2 -1.8 -0.8
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -0.6 -5.0 +0.2 +0.8 +0.5
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -0.6 -4.8 +0.5 -0.1 +0.9
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 0.5 mM -0.2 -4.2 +0.2 -0.1 +0.6
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -0.5 -3.9 +0.1 +0.1 +0.8
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -0.2 -4.1 +0.1 -0.0 +0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -2.9 +0.6 +0.4 +0.8
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -0.2 -3.9 +1.0 +0.5 +1.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -4.0 +1.1 +1.3 +0.2
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -0.7 -3.9 +1.1 +1.9 +1.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -4.4 +1.8 +1.6 +1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.7 -2.2 +0.2 +3.0 +0.4
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.5 -3.0 +2.0 +1.0 +1.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.4 -2.0 +0.5 +3.0 +1.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.6 -1.2 +1.7 +2.5 +1.7
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.1 -2.2 +3.2 +0.6 +2.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.7 -0.8 +1.9 +1.7 +1.9
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.1 -1.0 +2.7 +2.5 +2.3
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.4 -0.8 +2.7 +1.5 +2.6
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.1 -2.5 +2.8 +4.2 +3.6
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