Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004632 and ABIE53_004633 are separated by 110 nucleotidesABIE53_004633 and ABIE53_004634 are separated by 49 nucleotidesABIE53_004634 and ABIE53_004635 are separated by 467 nucleotidesABIE53_004635 and ABIE53_004636 are separated by 132 nucleotides ABIE53_004632: ABIE53_004632 - CRP/FNR family cyclic AMP-dependent transcriptional regulator, at 815,073 to 815,786 _004632 ABIE53_004633: ABIE53_004633 - putative membrane protein YGL010W, at 815,897 to 816,436 _004633 ABIE53_004634: ABIE53_004634 - chloramphenicol-sensitive protein RarD, at 816,486 to 817,376 _004634 ABIE53_004635: ABIE53_004635 - L-histidine N-alpha-methyltransferase, at 817,844 to 818,824 _004635 ABIE53_004636: ABIE53_004636 - acylphosphatase, at 818,957 to 819,250 _004636
Group Condition ABIE53_004632 ABIE53_004633 ABIE53_004634 ABIE53_004635 ABIE53_004636
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.4 -0.1 -0.9 +0.3
nitrogen source histamine 5mM N source -0.6 -0.0 +0.1 -0.1 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -0.1 -0.1 -0.5 +0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.5 +0.2 -0.1 -0.3
stress RCH2_defined_glucose_5mM with Lumazine 5 mM +0.2 +0.1 -0.1 -1.0 -0.3
carbon source Tween 20 (C) -0.2 -0.3 -0.4 +0.3 -0.5
carbon source L-Serine (C) +0.2 -0.4 -0.1 -0.2 -0.6
stress RCH2_defined_glucose_5mM with Sucrose 5 mM -0.6 -0.1 +0.4 -0.3 -0.2
carbon source L-Threonine (C) -0.1 -0.2 +0.3 -0.3 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.5 -0.1 -0.3 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.8 -0.2 -0.0 -0.0 +0.4
carbon source Laminarin 10 g/L (C) -0.4 +0.4 -0.2 -0.2 +0.2
carbon source Trisodium citrate (C) +0.2 +0.2 +0.3 -0.6 -0.2
carbon source Beta-Lactose (C) -0.1 +0.4 +0.2 -0.5 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.2 -0.2 -0.3 +0.6
stress Growth in presence of pinene +0.2 -0.4 -0.3 +0.5 +0.1
carbon source Acetylated xylan 10 g/L (C) -0.5 -0.4 -0.0 +0.1 +1.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -0.4 -0.1 +0.3 -0.1
plant outgrowth control Plant outgrowth control +0.2 -0.6 +0.0 +0.2 +0.5
stress RCH2_defined_glucose_5mM with Lumazine 5 mM +0.3 +0.4 +0.4 -0.8 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.3 +0.4 +0.0 +0.2
r2a outgrowth control R2A outgrowth control -0.2 -0.1 -0.1 +0.1 +0.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.4 +0.4 -0.0 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.7 +0.4 -0.1 +0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 -0.1 +0.7 +0.3 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.1 +0.4 +0.3 +0.1 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.2 +0.4 +0.4 -0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.3 +0.7 +0.3 +0.3 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.1 +0.4 -0.1 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +0.6 +0.2 +0.4 +0.5
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