Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_004576	ABIE53_004577	ABIE53_004578	ABIE53_004579	ABIE53_004580
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.1	-0.0	-2.8	-0.8	-0.2
carbon source	D-Glucose-6-Phosphate (C)	-0.1	-0.2	-1.9	+0.2	+0.1
carbon source	D-Sorbitol (C)	-0.4	-0.1	-1.2	+0.1	-0.2
in planta	Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.4	-0.1	-1.6	-0.2	+0.5
carbon source	D-Lactate (C)	-1.9	+0.3	+0.4	-0.1	-0.2
soil extract	4-Hydroxybenzoic Acid 5 mM in soil extract	-0.1	-0.3	-0.6	-0.2	-0.4
carbon source	D-Lactate (C)	-1.5	-0.2	+0.4	-0.2	+0.1
stress	RCH2_defined_glucose_5mM with Sucrose 5 mM	-0.2	-0.5	-0.9	-0.1	+0.3
plant outgrowth control	Plant outgrowth control	-0.4	-0.1	-0.8	+0.2	-0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.5	+0.1	-0.9	-0.2	+0.4
biofilm	biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound	+0.3	-0.2	-1.2	+0.0	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.2	-0.2	-0.8	+0.1	+0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	-0.1	-1.1	+0.3	+0.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	+0.1	-1.1	+0.4	-0.1
carbon source	Shikimic Acid 5 mM (C)	+0.3	-0.2	-0.7	-0.2	+0.3
stress	R2A with N-decanoyl-DL-Homoserine lactone 10 uM	+0.5	-0.0	-0.9	-0.1	+0.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	+0.2	-1.0	+0.2	+0.3
stress	Growth in presence of pinene	+0.6	-0.0	-0.6	-0.1	+0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.4	-0.0	-0.6	+0.2	+0.3
stress	RCH2_defined_glucose_5mM with caffeic 0.5 mM	-0.1	-0.0	+0.9	-0.3	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.5	-0.1	-0.5	+0.4	+0.2
carbon source	L-Lactate (C)	+1.0	-0.1	+0.5	-0.2	-0.2
r2a outgrowth control	R2A outgrowth control	+0.5	+0.1	+0.6	-0.3	+0.2
r2a no shaking	R2A no shaking	+0.3	-0.3	+0.6	+0.3	+0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.0	+0.3	+0.7	-0.4	+0.7
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.7	+0.2	+0.3	+0.2	+0.1
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.0	+0.8	+0.9	-0.1	-0.0
plant outgrowth control	Plant outgrowth control	+0.2	-0.0	+0.5	+0.3	+0.6
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	-0.2	+1.6	-0.1	+0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.4	-0.0	+1.5	+0.2	+0.6