Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004555 and ABIE53_004556 are separated by 31 nucleotidesABIE53_004556 and ABIE53_004557 are separated by 1 nucleotidesABIE53_004557 and ABIE53_004558 overlap by 4 nucleotidesABIE53_004558 and ABIE53_004559 overlap by 4 nucleotides ABIE53_004555: ABIE53_004555 - DNA-binding MarR family transcriptional regulator, at 743,532 to 744,104 _004555 ABIE53_004556: ABIE53_004556 - enoyl-CoA hydratase/carnithine racemase, at 744,136 to 744,987 _004556 ABIE53_004557: ABIE53_004557 - acyl-CoA dehydrogenase, at 744,989 to 746,221 _004557 ABIE53_004558: ABIE53_004558 - 4-hydroxybenzoyl-CoA thioesterase, at 746,218 to 746,661 _004558 ABIE53_004559: ABIE53_004559 - enamine deaminase RidA (YjgF/YER057c/UK114 family), at 746,658 to 747,053 _004559
Group Condition ABIE53_004555 ABIE53_004556 ABIE53_004557 ABIE53_004558 ABIE53_004559
carbon source L-Tryptophan (C) N.D. -4.5 -4.9 -2.3 N.D.
carbon source L-Tryptophan (C) N.D. -3.0 -4.1 -2.3 N.D.
lb_dap plate control LB_DAP agar plate, outgrowth in LB N.D. -0.6 -0.1 -1.9 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -0.8 +0.0 -1.7 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -0.2 -0.2 -2.0 N.D.
carbon source Indole-3-pyruvic and Ethanols N.D. -0.1 -0.2 -2.0 N.D.
carbon source butyrate (C) N.D. -0.3 +0.0 -1.9 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -0.5 -0.3 -1.3 N.D.
carbon source Pectin 10 g/L (C) N.D. -0.2 +0.0 -1.9 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.3 +0.2 -2.0 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.4 -0.1 -1.5 N.D.
soil extract Indole-3-pyruvic 5 mM in soil extract N.D. -0.6 -0.1 -1.2 N.D.
carbon source fumaric 20mM N.D. -0.4 -0.0 -1.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.4 -0.1 -1.4 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.1 -0.7 -1.1 N.D.
carbon source L-Proline (C) N.D. -0.7 -0.6 -0.6 N.D.
carbon source Glucuronamide (C) N.D. +0.2 +0.1 -2.1 N.D.
carbon source Shikimic Acid (C) N.D. +0.2 -0.2 -1.7 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.1 +0.2 -1.8 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.3 +0.5 -2.2 N.D.
plant outgrowth control Plant outgrowth control N.D. +0.4 -0.0 -1.5 N.D.
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. +0.4 +0.3 -1.7 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. +0.7 -0.1 -1.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.3 -1.0 +0.8 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.4 +0.4 -1.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.5 -0.1 +1.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.6 +0.9 -0.8 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.4 +0.2 +1.9 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.2 +0.0 +2.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.1 +0.0 +2.1 N.D.
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