Fitness for 5 genes in Paraburkholderia graminis OAS925

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 488 experiments or choose conditions or try the comparative fitness browser

500 ntABIE53_004551 and ABIE53_004552 are separated by 32 nucleotidesABIE53_004552 and ABIE53_004553 are separated by 118 nucleotidesABIE53_004553 and ABIE53_004554 overlap by 4 nucleotidesABIE53_004554 and ABIE53_004555 overlap by 4 nucleotides ABIE53_004551: ABIE53_004551 - amidase, at 738,362 to 739,498 _004551 ABIE53_004552: ABIE53_004552 - 3-oxoacyl-[acyl-carrier protein] reductase, at 739,531 to 740,274 _004552 ABIE53_004553: ABIE53_004553 - anthraniloyl-CoA monooxygenase, at 740,393 to 742,765 _004553 ABIE53_004554: ABIE53_004554 - 3-hydroxybutyrate dehydrogenase, at 742,762 to 743,535 _004554 ABIE53_004555: ABIE53_004555 - DNA-binding MarR family transcriptional regulator, at 743,532 to 744,104 _004555
Group Condition ABIE53_004551 ABIE53_004552 ABIE53_004553 ABIE53_004554 ABIE53_004555
carbon source L-Tryptophan (C) +1.1 -1.4 -3.7 -4.7 N.D.
carbon source L-Tryptophan (C) +0.2 -0.8 -3.2 -3.8 N.D.
plant outgrowth control Plant outgrowth control -1.1 -3.6 -0.5 -0.2 N.D.
soil extract Indole-3-pyruvic 5 mM in soil extract -1.0 -1.0 -0.5 -1.8 N.D.
soil extract Indole-3-pyruvic 5 mM in soil extract -1.2 -0.2 -0.2 -2.2 N.D.
carbon source 2,3-dihydroxybenzoic and Ethanols -1.5 -1.0 -0.4 +0.1 N.D.
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 0.5 mM -0.7 -1.6 +0.3 -0.7 N.D.
plant outgrowth control Plant outgrowth control -1.4 -0.1 -0.5 -0.7 N.D.
stress RCH2_defined_glucose_5mM with Sucrose 5 mM -0.5 -1.9 +0.1 -0.3 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.5 -1.2 +0.1 -0.9 N.D.
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -1.2 -0.7 +0.4 -0.6 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.1 +0.4 -0.3 -1.0 N.D.
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent +0.5 -0.4 -0.5 -1.4 N.D.
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -0.9 -0.9 +0.4 -0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 +0.9 -0.6 -0.6 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 -0.4 -0.7 -1.0 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.8 -1.7 -0.2 +0.4 N.D.
carbon source Acetylated xylan 10 g/L (C) -1.1 +0.3 -0.5 +0.7 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.1 -0.8 +0.2 -0.5 N.D.
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.3 +0.8 -0.3 +0.8 N.D.
stress Growth in presence of limonene +1.3 -0.8 -0.1 -0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +0.6 -0.7 -0.5 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +1.0 -0.3 -0.9 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.7 +2.2 -0.1 -0.8 N.D.
stress M9 with 3-methyl-2-butenol 2 g/L -1.1 +0.8 +0.7 +0.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.1 +0.9 -0.4 -0.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.0 +1.4 -0.4 -0.4 N.D.
stress R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM +0.4 +1.2 -0.4 +0.8 N.D.
stress R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM +0.8 +0.8 -0.2 +1.2 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.7 +1.1 +0.2 +0.8 N.D.
remove
ABIE53_004551
plot		 remove
ABIE53_004552
plot		 remove
ABIE53_004553		 remove
ABIE53_004554
plot		 remove
ABIE53_004555
plot