Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_004550	ABIE53_004551	ABIE53_004552	ABIE53_004553	ABIE53_004554
carbon source	L-Tryptophan (C)	+0.0	+1.1	-1.4	-3.7	-4.7
carbon source	L-Tryptophan (C)	-0.2	+0.2	-0.8	-3.2	-3.8
plant outgrowth control	Plant outgrowth control	-0.6	-1.1	-3.6	-0.5	-0.2
soil extract	Indole-3-pyruvic 5 mM in soil extract	-0.4	-1.0	-1.0	-0.5	-1.8
soil extract	Indole-3-pyruvic 5 mM in soil extract	-0.7	-1.2	-0.2	-0.2	-2.2
carbon source	2,3-dihydroxybenzoic and Ethanols	+0.1	-1.5	-1.0	-0.4	+0.1
stress	RCH2_defined_glucose_5mM with Indole-3-pyruvic 0.5 mM	+0.3	-0.7	-1.6	+0.3	-0.7
stress	RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM	-0.1	-1.2	-0.7	+0.4	-0.6
stress	RCH2_defined_glucose_5mM with Adenine 5 mM	-0.4	+0.3	-1.7	-0.2	-0.2
stress	RCH2_defined_glucose_5mM with Sucrose 5 mM	+0.4	-0.5	-1.9	+0.1	-0.3
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.5	-0.5	-1.2	+0.1	-0.9
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.8	-1.1	+0.9	-0.6	-0.6
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-0.0	+0.5	-0.4	-0.5	-1.4
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.2	-1.1	+0.4	-0.3	-1.0
carbon source	Acetylated xylan 10 g/L (C)	-0.8	-1.1	+0.3	-0.5	+0.7
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	+0.8	-0.4	-0.7	-1.0
stress	R2A with Tricalcium phosphate 0.5 g/L	+0.4	+0.5	-1.7	-0.1	-0.1
in planta	Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.7	-1.3	+0.8	-0.3	+0.8
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.0	+0.8	-1.7	-0.2	+0.4
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.7	+0.5	+1.0	-0.3	-0.9
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	+1.1	-0.8	+0.2	-0.5
stress	Growth in presence of limonene	+0.3	+1.3	-0.8	-0.1	-0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.4	+1.1	+0.9	-0.4	-0.5
stress	M9 with 3-methyl-2-butenol 2 g/L	+0.1	-1.1	+0.8	+0.7	+0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.6	+0.8	+0.6	-0.7	-0.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.3	-0.7	+2.2	-0.1	-0.8
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.0	+1.0	+1.4	-0.4	-0.4
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	+0.3	+0.4	+1.2	-0.4	+0.8
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	+0.1	+0.8	+0.8	-0.2	+1.2
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.4	+1.7	+1.1	+0.2	+0.8