Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_004532	ABIE53_004533	ABIE53_004534	ABIE53_004535	ABIE53_004536
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-1.0	-0.5	-0.0	-1.1
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	N.D.	-1.1	-1.3	+0.1	-0.1
carbon source	Uridine (C)	N.D.	-0.6	-0.6	-0.2	-0.9
carbon source	Tween 20 (C)	N.D.	-0.1	-1.0	-0.0	-1.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-1.1	-0.2	-0.3	-0.5
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-0.5	-0.4	-0.8	-0.3
r2a outgrowth control	R2A outgrowth control	N.D.	-0.2	+0.2	-0.2	-1.6
carbon source	L-Proline (C)	N.D.	-0.7	-0.2	+0.1	-1.0
carbon source	Laminarin 10 g/L (C)	N.D.	-0.1	-0.5	+0.2	-1.2
stress	R2A with Tricalcium phosphate 0.5 g/L	N.D.	-0.3	-0.6	+0.1	-0.9
carbon source	Inosine (C)	N.D.	-1.1	-0.3	-0.6	+0.2
stress	R2A with Tricalcium phosphate 0.5 g/L	N.D.	-0.0	-0.8	+0.2	-0.9
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	N.D.	-0.8	-0.6	-0.3	+0.3
in planta	Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	N.D.	+0.5	-0.4	-0.4	-1.1
r2a outgrowth control	R2A outgrowth control	N.D.	-0.1	+0.7	-0.5	-1.3
carbon source	D-Glucosamine Hydrochloride (C)	N.D.	-0.8	-0.6	-0.2	+0.3
carbon source	L-Alanine (C)	N.D.	-0.8	+0.3	-0.2	-0.5
soil extract	Indole-3-pyruvic 5 mM in soil extract	N.D.	+0.1	+0.5	-0.6	-1.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-0.9	-0.4	-0.4	+0.7
stress	M9 with 3-methyl-2-butenol 2 g/L	N.D.	-0.9	-0.2	-0.4	+0.4
stress	RCH2_defined_glucose_5mM with Sucrose 5 mM	N.D.	-0.1	-0.4	+0.5	-0.9
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-0.6	-0.3	-0.4	+0.5
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-1.2	-0.7	+0.6	+0.5
soil extract	Indole-3-pyruvic 5 mM in soil extract	N.D.	+0.5	+0.5	-0.4	-0.9
carbon source	D-Lactate (C)	N.D.	-1.1	+0.1	-0.1	+0.9
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	N.D.	+1.0	-0.6	-0.5	+0.8
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	N.D.	+0.2	-0.6	-0.1	+1.3
m9 no stress control	M9 no stress control	N.D.	-0.5	+0.3	+0.4	+0.6
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	N.D.	-0.6	+1.0	+0.1	+0.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+0.9	-0.5	+0.1	+0.6