Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_004530	ABIE53_004531	ABIE53_004532	ABIE53_004533	ABIE53_004534
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-2.7	-0.3	N.D.	-0.9	-0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-1.3	-0.2	N.D.	-0.8	-0.8
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.3	-0.1	N.D.	-1.1	-1.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.3	-0.7	N.D.	-0.8	-0.6
carbon source	Inosine (C)	-0.9	+0.0	N.D.	-1.1	-0.3
carbon source	4-Hydroxybenzoic Acid (C)	-1.4	+0.3	N.D.	-0.6	-0.4
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.5	-0.5	N.D.	-0.5	-0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-1.9	-0.1	N.D.	+0.5	-0.3
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	-0.2	N.D.	-1.2	-0.7
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.1	+0.2	N.D.	-0.4	-0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.5	-0.1	N.D.	-1.0	-0.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.9	-0.3	N.D.	+0.2	+0.4
carbon source	L-Alanine (C)	-0.5	+0.4	N.D.	-0.8	+0.3
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.8	-0.1	N.D.	-0.6	+1.0
stress	R2A with Clay 500 g/L	+0.7	-0.2	N.D.	-0.9	+0.2
carbon source	Acetylated xylan 10 g/L (C)	+1.1	-0.2	N.D.	-0.7	-0.1
stress	M9 with Chloride 200 mM	+0.4	-0.2	N.D.	+0.6	-0.6
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.1	-0.1	N.D.	-0.1	-0.7
motility_chemotaxis	Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut	+0.6	-0.3	N.D.	-0.5	+0.5
motility_chemotaxis	Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut	+0.8	+0.1	N.D.	-0.7	+0.1
carbon source	shik 20mM	+0.8	+0.0	N.D.	-0.9	+0.4
mixed community	Mixed culture; Alteromonas stellipolaris PQQ42 1:1 starting OD to Burkholderia	+1.0	+0.1	N.D.	-0.8	+0.3
r2a shaking control	R2A shaking control	+0.5	+0.2	N.D.	-0.7	+0.4
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.2	+0.4	N.D.	+1.0	-0.6
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.9	+0.5	N.D.	-0.3	-0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.4	+0.4	N.D.	+0.6	+0.6
carbon source	Citric Acid 20 mM (C)	+0.6	+0.3	N.D.	-0.4	+0.7
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.6	+0.3	N.D.	-0.5	+0.8
stress	R2A with Quartz_sand 500 g/L	+0.8	+0.2	N.D.	-0.3	+0.5
plant outgrowth control	Plant outgrowth control	+1.0	-0.1	N.D.	+0.8	+0.0