Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004529 and ABIE53_004530 are separated by 9 nucleotidesABIE53_004530 and ABIE53_004531 are separated by 41 nucleotidesABIE53_004531 and ABIE53_004532 are separated by 591 nucleotidesABIE53_004532 and ABIE53_004533 are separated by 104 nucleotides ABIE53_004529: ABIE53_004529 - hypothetical protein, at 718,115 to 719,341 _004529 ABIE53_004530: ABIE53_004530 - glutamine cyclotransferase, at 719,351 to 720,004 _004530 ABIE53_004531: ABIE53_004531 - MFS family permease, at 720,046 to 721,416 _004531 ABIE53_004532: ABIE53_004532 - hypothetical protein, at 722,008 to 722,355 _004532 ABIE53_004533: ABIE53_004533 - hypothetical protein, at 722,460 to 723,380 _004533
Group Condition ABIE53_004529 ABIE53_004530 ABIE53_004531 ABIE53_004532 ABIE53_004533
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -2.7 -0.3 N.D. -0.9
carbon source Inosine (C) -1.1 -0.9 +0.0 N.D. -1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.7 -1.3 -0.2 N.D. -0.8
carbon source D-Lactate (C) -1.3 -0.4 +0.3 N.D. -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.2 -0.3 -0.7 N.D. -0.8
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.5 -0.3 -0.1 N.D. -1.1
carbon source 4-Hydroxybenzoic Acid (C) +0.2 -1.4 +0.3 N.D. -0.6
carbon source Inosine (C) -0.5 -1.2 +0.0 N.D. +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 -0.1 -0.3 N.D. -1.1
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -0.6 -0.8 +0.3 N.D. +0.4
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.3 -0.2 N.D. -1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.9 -1.9 -0.1 N.D. +0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.9 +0.6 +0.3 N.D. -0.5
stress RCH2_defined_glucose_5mM with Sucrose 5 mM +0.7 -0.6 -0.4 N.D. -0.1
carbon source L-Proline (C) -0.5 +0.7 +0.1 N.D. -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 -0.1 +0.2 N.D. -0.9
stress R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM +0.5 +0.4 -0.2 N.D. -0.8
mixed community Mixed culture; Alteromonas stellipolaris PQQ42 1:1 starting OD to Burkholderia -0.3 +1.0 +0.1 N.D. -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +0.5 -0.1 N.D. -1.0
carbon source shik 20mM +0.2 +0.8 +0.0 N.D. -0.9
motility_chemotaxis Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut +0.2 +0.8 +0.1 N.D. -0.7
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.6 -0.2 +0.4 N.D. +1.0
nitrogen source 1-aminocyclopropane-1-carboxylate (ACC) (N) +0.3 +0.7 +0.3 N.D. -0.5
plant outgrowth control Plant outgrowth control +1.1 +0.4 -0.1 N.D. -0.4
plant outgrowth control Plant outgrowth control +0.8 +0.6 +0.2 N.D. -0.5
carbon source Acetylated xylan 10 g/L (C) +1.1 +1.1 -0.2 N.D. -0.7
stress R2A with N-(3-oxohexanoyl)-DL-homoserine lactone 10 uM +0.7 +0.9 +0.0 N.D. -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.8 +0.2 +0.3 N.D. +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.2 +1.1 -0.1 N.D. -0.1
plant outgrowth control Plant outgrowth control +0.9 +1.0 -0.1 N.D. +0.8
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