Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004528 and ABIE53_004529 are separated by 123 nucleotidesABIE53_004529 and ABIE53_004530 are separated by 9 nucleotidesABIE53_004530 and ABIE53_004531 are separated by 41 nucleotidesABIE53_004531 and ABIE53_004532 are separated by 591 nucleotides ABIE53_004528: ABIE53_004528 - putative dithiol-disulfide oxidoreductase (DUF899 family), at 717,224 to 717,991 _004528 ABIE53_004529: ABIE53_004529 - hypothetical protein, at 718,115 to 719,341 _004529 ABIE53_004530: ABIE53_004530 - glutamine cyclotransferase, at 719,351 to 720,004 _004530 ABIE53_004531: ABIE53_004531 - MFS family permease, at 720,046 to 721,416 _004531 ABIE53_004532: ABIE53_004532 - hypothetical protein, at 722,008 to 722,355 _004532
Group Condition ABIE53_004528 ABIE53_004529 ABIE53_004530 ABIE53_004531 ABIE53_004532
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.5 -2.7 -0.3 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.2 -0.7 -0.3 -0.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 -0.7 -1.3 -0.2 N.D.
carbon source Inosine (C) -0.1 -1.1 -0.9 +0.0 N.D.
phage Burk2_10 -0.2 -0.5 -0.9 -0.2 N.D.
carbon source D-Xylose (C) -0.2 -0.0 -1.6 +0.1 N.D.
carbon source Inosine (C) +0.2 -0.5 -1.2 +0.0 N.D.
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -0.4 -0.6 -0.8 +0.3 N.D.
phage Burk1_100 -1.0 +0.2 -0.7 -0.0 N.D.
carbon source D-Lactate (C) +0.3 -1.3 -0.4 +0.3 N.D.
carbon source 4-Hydroxybenzoic Acid (C) -0.1 +0.2 -1.4 +0.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.4 +0.9 -1.9 -0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 +0.0 -0.9 -0.3 N.D.
stress RCH2_defined_glucose_5mM with Sucrose 5 mM +0.1 +0.7 -0.6 -0.4 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.0 -0.9 +0.6 +0.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.3 -0.2 -0.3 -0.7 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.1 +1.0 -0.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.7 +0.5 -0.1 N.D.
stress Growth in presence of pinene -0.5 +0.1 +1.2 -0.0 N.D.
r2a outgrowth control R2A outgrowth control -0.5 +0.5 +0.9 -0.1 N.D.
plant outgrowth control Plant outgrowth control -0.3 +1.1 +0.4 -0.1 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -0.3 +0.9 +0.5 N.D.
plant outgrowth control Plant outgrowth control -0.2 +1.0 +0.8 -0.0 N.D.
carbon source Acetylated xylan 10 g/L (C) -0.4 +1.1 +1.1 -0.2 N.D.
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM +0.6 +0.6 -0.1 +0.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.7 +0.8 +0.2 N.D.
plant outgrowth control Plant outgrowth control -0.1 +0.9 +1.0 -0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.4 +1.0 -0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +1.2 +1.1 -0.1 N.D.
stress R2A with N-(3-oxohexanoyl)-DL-homoserine lactone 10 uM +0.3 +0.7 +0.9 +0.0 N.D.
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