Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_004445	ABIE53_004446	ABIE53_004447	ABIE53_004448	ABIE53_004449
carbon source	Shikimic Acid 5 mM (C)	+0.1	-0.8	N.D.	-0.2	-1.1
stress	M9 with Chloride 200 mM	-0.2	-0.5	N.D.	-0.1	-1.0
stress	RCH2_defined_glucose_5mM with homovanillyl alcohol 5 mM	-0.2	-0.2	N.D.	-0.2	-1.0
carbon source	Glucuronamide (C)	-0.2	-0.2	N.D.	+0.2	-1.4
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.3	+0.3	N.D.	+0.0	-1.3
carbon source	Tween 20 (C)	-0.1	-0.2	N.D.	+0.1	-0.9
soil extract	Adenine 5 mM in soil extract	-0.3	+0.3	N.D.	-0.1	-1.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.4	-0.1	N.D.	-0.1	-1.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.0	+0.3	N.D.	-0.0	-1.3
carbon source	D-Mannose (C)	+0.1	-0.4	N.D.	+0.2	-1.0
stress	RCH2_defined_glucose_5mM with Ferulic Acid 5 mM	-0.2	+0.2	N.D.	-0.1	-0.9
carbon source	Acetylated xylan 10 g/L (C)	+0.4	-0.2	N.D.	-0.4	-0.7
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.5	+0.2	N.D.	+0.2	-0.8
stress control	RCH2_defined_glucose_5mM with Dimethyl Sulfoxide 1 vol%	+0.0	+0.2	N.D.	-0.2	-0.9
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	-0.6	N.D.	+0.4	-0.8
stress	RCH2_defined_glucose_5mM with Adenine 5 mM	-0.1	+0.1	N.D.	+0.2	-1.1
carbon source	D-Glucose (C)	-0.3	-0.2	N.D.	+0.3	-0.5
carbon source	D-Galacturonic Acid (C)	+0.1	-0.4	N.D.	+0.3	-0.8
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	-0.0	N.D.	+0.1	-1.1
carbon source	Acetylated xylan 10 g/L (C)	+0.4	-0.0	N.D.	-0.5	-0.5
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.1	-1.0	N.D.	+0.2	+0.3
stress	RCH2_defined_glucose_5mM with Serotonin 5 mM	+0.1	+0.5	N.D.	-0.3	-0.6
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.0	-0.6	N.D.	-0.4	+0.7
stress	RCH2_defined_glucose_5mM with 4-Pyridoxic 5 mM	+0.2	+0.5	N.D.	-0.1	-0.6
soil extract	caffeic 5 mM in soil extract	+0.3	+0.3	N.D.	+0.1	-0.7
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.5	+0.4	N.D.	+0.1	-0.6
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	-0.1	N.D.	-0.4	+0.8
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.1	+0.4	N.D.	-0.1	+0.8
soil extract	Indole-3-pyruvic 5 mM in soil extract	+0.2	-0.2	N.D.	+0.3	+1.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.6	+0.2	N.D.	+0.0	+0.6