Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004429 and ABIE53_004430 are separated by 207 nucleotidesABIE53_004430 and ABIE53_004431 are separated by 80 nucleotidesABIE53_004431 and ABIE53_004432 are separated by 98 nucleotidesABIE53_004432 and ABIE53_004433 are separated by 45 nucleotides ABIE53_004429: ABIE53_004429 - hypothetical protein, at 619,348 to 620,025 _004429 ABIE53_004430: ABIE53_004430 - EmrB/QacA subfamily drug resistance transporter, at 620,233 to 621,795 _004430 ABIE53_004431: ABIE53_004431 - 5-dehydro-4-deoxyglucarate dehydratase, at 621,876 to 622,793 _004431 ABIE53_004432: ABIE53_004432 - glucarate dehydratase, at 622,892 to 624,241 _004432 ABIE53_004433: ABIE53_004433 - MFS family permease, at 624,287 to 625,618 _004433
Group Condition ABIE53_004429 ABIE53_004430 ABIE53_004431 ABIE53_004432 ABIE53_004433
carbon source Glucuronamide (C) +0.0 -0.0 +0.2 -3.4 -2.3
carbon source D-Glucuronic Acid (C) -0.4 -0.8 +0.2 -2.1 -2.0
carbon source Glucuronamide (C) +0.2 +0.3 -0.4 -3.1 -2.1
carbon source D-Glucuronic Acid (C) -0.2 -0.4 +0.0 -1.9 -2.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -1.0 -0.4 -0.4 -0.2
carbon source Shikimic Acid 5 mM (C) -0.9 -0.1 -0.3 -1.0 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.6 -0.1 -0.8 -0.1
phage Burk2_10 -0.2 -0.9 +0.1 -0.6 -0.2
carbon source Shikimic Acid 5 mM (C) -1.0 -0.2 -0.5 -0.5 +0.4
r2a outgrowth control R2A outgrowth control -0.6 -0.5 -0.7 -0.2 +0.3
plant outgrowth control Plant outgrowth control -0.5 -0.3 -0.6 -0.5 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 +0.4 -0.1 -0.7 -0.3
stress RCH2_defined_glucose_5mM with Pyruvic 5 mM -0.6 -0.6 -0.1 +0.3 -0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -0.5 -0.3 +0.5 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.4 -1.6 +0.9 +0.5 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.4 -0.7 -0.0 +0.5 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.6 +0.7 -0.5 -0.3
stress RCH2_defined_glucose_5mM with Sucrose 5 mM -0.3 +0.1 -0.6 +0.6 -0.5
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.5 -0.5 +0.3 +0.4 -0.3
carbon source Acetylated xylan 10 g/L (C) -0.5 +0.6 -0.3 -0.2 +0.3
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.0 +1.0 -0.9 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.4 +0.4 -0.6 +1.1 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 +0.2 +0.5 +0.6 +0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.0 +0.7 +0.9 -0.1 -0.4
stress R2A with Ethanol 2.5 vol% +0.2 +0.5 +0.2 +0.7 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.4 +0.3 +0.6 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.5 +0.2 +1.3 -0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.6 +0.3 +0.5 -0.4 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.1 +0.5 +0.7 +0.7
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.3 +0.4 +0.6 -0.3 +0.1
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ABIE53_004429
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ABIE53_004430
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ABIE53_004432
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ABIE53_004433
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