Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_004407	ABIE53_004408	ABIE53_004409	ABIE53_006572	ABIE53_004410
nitrogen source	histamine 2mM N source	+0.1	-5.1	-0.2	N.D.	-0.3
plant outgrowth control	Plant outgrowth control	-0.1	-5.1	-0.1	N.D.	+0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.7	-4.1	-0.0	N.D.	+0.1
carbon source	D-Lactate (C)	-0.0	-4.2	-0.1	N.D.	-0.2
carbon source	L-Tryptophan (C)	+0.6	-4.6	+0.2	N.D.	-0.4
stress	RCH2_defined_glucose_5mM with Adenine 4 mM	+0.1	-2.5	-0.5	N.D.	-0.7
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.3	-3.4	+0.1	N.D.	+0.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	-3.4	-0.0	N.D.	-0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.1	-3.4	+0.1	N.D.	-0.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	-3.4	-0.2	N.D.	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.6	-2.2	-0.0	N.D.	-0.3
motility_chemotaxis	Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut	-0.1	-2.6	-0.1	N.D.	-0.2
stress	RCH2_defined_glucose_5mM with Epiandrosterone 5 mM	-0.4	-1.9	-0.1	N.D.	-0.3
stress	RCH2_defined_glucose_5mM with Indole-3-pyruvic 0.5 mM	-0.3	-2.1	-0.1	N.D.	-0.3
soil extract	D-Glucose 5 mM in soil extract	-0.3	-2.4	-0.0	N.D.	+0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	-2.3	-1.1	N.D.	+0.7
carbon source	butyrate (C)	+0.2	-2.1	-0.3	N.D.	-0.1
carbon source	Inosine (C)	+0.5	-2.5	-0.1	N.D.	+0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.7	-2.4	+0.2	N.D.	-0.3
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.4	-1.9	+0.4	N.D.	+0.3
carbon source	D-Glucose-6-Phosphate (C)	+0.6	-2.1	+0.0	N.D.	+0.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	-2.1	-0.0	N.D.	+0.6
carbon source	D-Glucose-6-Phosphate (C)	+1.0	-1.4	+0.0	N.D.	-0.4
carbon source	Acetylated xylan 10 g/L (C)	-0.6	+1.9	+0.1	N.D.	-0.2
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.2	+2.3	-0.2	N.D.	-0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.0	+2.4	-0.2	N.D.	-0.4
carbon source	Laminarin 10 g/L (C)	-0.1	+2.4	-0.2	N.D.	-0.0
carbon source	Laminarin 10 g/L (C)	-0.2	+2.6	-0.1	N.D.	+0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	+2.1	+0.5	N.D.	-0.3
carbon source	Acetylated xylan 10 g/L (C)	-0.2	+3.2	+0.1	N.D.	+0.0