Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004360 and ABIE53_004361 are separated by 1012 nucleotidesABIE53_004361 and ABIE53_004362 are separated by 445 nucleotidesABIE53_004362 and ABIE53_004363 overlap by 11 nucleotidesABIE53_004363 and ABIE53_004364 are separated by 57 nucleotides ABIE53_004360: ABIE53_004360 - autotransporter adhesin, at 539,530 to 545,751 _004360 ABIE53_004361: ABIE53_004361 - autotransporter adhesin, at 546,764 to 548,638 _004361 ABIE53_004362: ABIE53_004362 - DNA-binding response OmpR family regulator, at 549,084 to 549,893 _004362 ABIE53_004363: ABIE53_004363 - signal transduction histidine kinase, at 549,883 to 552,174 _004363 ABIE53_004364: ABIE53_004364 - iron complex outermembrane receptor protein, at 552,232 to 554,430 _004364
Group Condition ABIE53_004360 ABIE53_004361 ABIE53_004362 ABIE53_004363 ABIE53_004364
carbon source Shikimic Acid 5 mM (C) +0.4 -0.5 -1.2 -0.6 -0.2
carbon source Laminarin 10 g/L (C) +0.3 -0.8 -0.8 -0.2 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.3 -0.7 -0.4 -0.4
carbon source Acetylated xylan 10 g/L (C) +0.4 -0.1 -1.2 -0.1 -0.5
plant outgrowth control Plant outgrowth control +0.1 -0.5 -0.4 -0.4 -0.2
carbon source D-Glucosamine Hydrochloride (C) -0.1 -0.9 -0.2 +0.1 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.3 -1.1 -0.1 +0.2
plant outgrowth control Plant outgrowth control +0.2 +0.1 -0.6 -0.5 -0.5
carbon source Laminarin 10 g/L (C) +0.4 -0.4 -1.1 -0.1 +0.0
r2a outgrowth control R2A outgrowth control +0.2 -0.2 -0.9 -0.2 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.2 -1.1 -0.4 -0.0
stress R2A with Tricalcium phosphate 0.5 g/L +0.3 -0.6 -0.5 -0.3 -0.1
carbon source Acetylated xylan 10 g/L (C) +0.6 -0.1 -1.1 -0.2 -0.4
carbon source Shikimic Acid 5 mM (C) +0.4 -0.3 -1.0 -0.0 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.5 -0.6 -0.3 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.5 -0.3 -0.3 -0.5
plant outgrowth control Plant outgrowth control +0.4 -0.4 -0.2 -0.5 -0.2
carbon source D-Sorbitol (C) +0.0 -0.2 -0.8 -0.3 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.6 -1.0 -0.7 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.9 -0.1 -0.2 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -1.1 -0.1 +0.6 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.8 -0.5 +0.2 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -0.3 -0.8 +0.0 +0.5
soil extract Indole-3-pyruvic 5 mM in soil extract +0.1 +0.4 -0.5 +0.1 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.3 -0.9 -0.1 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.6 +0.2 +1.2 -0.4
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.3 -0.4 +0.3 +0.1
carbon source D-Gluconic Acid (C) +0.1 +0.6 -0.5 +0.0 +0.6
stress M9 with 3-methyl-2-butenol 2 g/L -0.1 +0.5 +0.5 +0.6 -0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.1 +0.4 +0.5 +0.5 +0.2
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ABIE53_004360
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