Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004335 and ABIE53_004336 are separated by 71 nucleotidesABIE53_004336 and ABIE53_004337 are separated by 53 nucleotidesABIE53_004337 and ABIE53_004338 are separated by 72 nucleotidesABIE53_004338 and ABIE53_004339 are separated by 33 nucleotides ABIE53_004335: ABIE53_004335 - DNA-binding transcriptional LysR family regulator, at 511,711 to 512,634 _004335 ABIE53_004336: ABIE53_004336 - hypothetical protein, at 512,706 to 513,008 _004336 ABIE53_004337: ABIE53_004337 - DNA-binding transcriptional LysR family regulator, at 513,062 to 513,985 _004337 ABIE53_004338: ABIE53_004338 - putative MFS family arabinose efflux permease, at 514,058 to 515,311 _004338 ABIE53_004339: ABIE53_004339 - pimeloyl-ACP methyl ester carboxylesterase, at 515,345 to 516,223 _004339
Group Condition ABIE53_004335 ABIE53_004336 ABIE53_004337 ABIE53_004338 ABIE53_004339
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.3 -0.7 -0.8 +0.1
plant outgrowth control Plant outgrowth control +0.1 -1.2 -0.9 -0.5 +0.6
r2a outgrowth control R2A outgrowth control -0.0 -0.4 -0.8 -0.7 +0.1
carbon source Acetylated xylan 10 g/L (C) +0.4 -2.0 -0.2 -0.1 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.4 -0.3 -0.5 -0.5 -0.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.2 -0.6 -0.9 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.7 -0.4 -0.4 -0.2
stress RCH2_defined_glucose_5mM with Adenine 4 mM -0.1 -0.3 -0.2 -1.0 +0.2
carbon source D-Mannose (C) +0.1 -0.4 -1.2 -0.2 +0.2
plant outgrowth control Plant outgrowth control -0.2 -0.9 -0.1 -0.5 +0.2
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -1.2 +0.3 -0.2 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -1.2 -0.3 +0.3 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -1.6 -0.2 +0.5 +0.4
carbon source D-Glucuronic Acid (C) +0.2 -0.6 -0.6 -0.2 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.4 +0.5 -0.3 -0.1
plant outgrowth control Plant outgrowth control -0.3 -0.9 -0.1 -0.0 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -1.0 -0.3 +0.5 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -1.0 +0.4 -0.2 +0.2
stress R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM +0.2 -0.6 -0.4 +0.4 -0.1
carbon source D-Galacturonic Acid (C) +0.2 -0.4 -0.7 +0.4 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.6 +0.5 +0.2 +0.2
carbon source Tween 20 (C) +0.2 -0.9 +0.0 +0.4 +0.3
carbon source succinate (C) +0.3 -0.6 -0.3 +0.4 +0.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.1 -0.5 +0.3 +0.7 -0.4
carbon source D-Glucuronic Acid (C) +0.2 -0.3 -0.6 +0.4 +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.7 -0.1 +0.8 +0.1
carbon source Tween 20 (C) +0.3 -0.5 +0.0 +0.5 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.5 +0.5 +0.4 +0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.2 +0.9 +0.3 +0.5 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.3 +0.1 +0.6 +0.8 +0.5
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