Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004326 and ABIE53_004327 are separated by 112 nucleotidesABIE53_004327 and ABIE53_004328 are separated by 378 nucleotidesABIE53_004328 and ABIE53_004329 are separated by 26 nucleotidesABIE53_004329 and ABIE53_004330 are separated by 111 nucleotides ABIE53_004326: ABIE53_004326 - acyl homoserine lactone synthase, at 500,741 to 501,334 _004326 ABIE53_004327: ABIE53_004327 - GntR family transcriptional repressor for pyruvate dehydrogenase complex, at 501,447 to 501,992 _004327 ABIE53_004328: ABIE53_004328 - nucleotide-binding universal stress UspA family protein, at 502,371 to 502,850 _004328 ABIE53_004329: ABIE53_004329 - two-component system response regulator ChvI, at 502,877 to 503,410 _004329 ABIE53_004330: ABIE53_004330 - 2-oxoglutarate dehydrogenase E1 component, at 503,522 to 506,128 _004330
Group Condition ABIE53_004326 ABIE53_004327 ABIE53_004328 ABIE53_004329 ABIE53_004330
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -0.1 N.D. -0.0 -0.3 -2.1
soil extract Indole-3-pyruvic 5 mM in soil extract -0.4 N.D. -0.3 -0.3 -0.8
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM +0.1 N.D. +0.1 -0.0 -1.7
soil extract Indole-3-pyruvic 5 mM in soil extract -0.2 N.D. -0.0 -0.1 -1.1
r2a outgrowth control R2A outgrowth control -0.0 N.D. -0.3 -0.9 -0.2
stress RCH2_defined_glucose_5mM with Salicylic 5 mM -0.3 N.D. -0.2 +0.1 -1.0
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.1 N.D. -0.4 -0.7 +0.1
stress RCH2_defined_glucose_5mM with 2,3-dihydroxybenzoic 5 mM -0.2 N.D. +0.1 +0.3 -0.9
stress RCH2_defined_glucose_5mM with caffeic 1 mM +0.2 N.D. -0.5 +0.5 -0.3
stress RCH2_defined_glucose_5mM with Lumazine 5 mM +0.5 N.D. -0.3 +0.6 -0.7
stress RCH2_defined_glucose_5mM with Lumazine 5 mM +0.6 N.D. +0.0 +0.4 -0.8
carbon source Acetylated xylan 10 g/L (C) +0.4 N.D. -0.5 +0.3 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 N.D. -0.1 -0.4 +0.2
carbon source L-Histidine (C) +0.6 N.D. -0.2 +0.5 -0.3
phage Burk1_100 +0.4 N.D. -0.2 +0.2 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 N.D. -0.2 +0.4 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 N.D. +0.5 -0.3 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 N.D. +0.1 +0.2 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 N.D. +0.6 +0.0 +0.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.8 N.D. +0.5 -0.2 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 N.D. +0.6 -0.3 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 N.D. +0.3 +0.4 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 N.D. +0.4 +0.3 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.8 N.D. +0.2 +0.5 +0.1
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 N.D. +0.4 +0.8 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.4 N.D. +0.1 +0.6 +0.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.9 N.D. +0.5 +0.2 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 N.D. +0.4 +0.4 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 N.D. +0.3 +0.5 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 N.D. +0.5 +0.4 +0.5
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