Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004285 and ABIE53_004286 are separated by 215 nucleotidesABIE53_004286 and ABIE53_004287 are separated by 177 nucleotidesABIE53_004287 and ABIE53_004288 are separated by 108 nucleotidesABIE53_004288 and ABIE53_004289 are separated by 164 nucleotides ABIE53_004285: ABIE53_004285 - CHAD domain-containing protein, at 459,600 to 460,481 _004285 ABIE53_004286: ABIE53_004286 - PiT family inorganic phosphate transporter, at 460,697 to 462,283 _004286 ABIE53_004287: ABIE53_004287 - polyphosphate kinase 2, at 462,461 to 463,387 _004287 ABIE53_004288: ABIE53_004288 - catechol 2,3-dioxygenase-like lactoylglutathione lyase family enzyme, at 463,496 to 463,936 _004288 ABIE53_004289: ABIE53_004289 - gamma-glutamyltranspeptidase/glutathione hydrolase, at 464,101 to 465,834 _004289
Group Condition ABIE53_004285 ABIE53_004286 ABIE53_004287 ABIE53_004288 ABIE53_004289
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.3 -0.4 -0.4 -0.2 -0.4
r2a outgrowth control R2A outgrowth control -1.5 -0.4 -0.3 -0.3 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.1 -0.3 -0.2 -0.3 +0.2
r2a outgrowth control R2A outgrowth control -1.3 +0.1 -0.4 -0.4 -0.1
carbon source Laminarin 10 g/L (C) -1.2 +0.0 -0.4 -0.4 +0.0
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.7 +0.1 -0.2 +0.0 +0.0
plant outgrowth control Plant outgrowth control -1.4 +0.1 -0.1 -0.5 +0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.1 -0.3 +0.1 -0.2 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 -0.0 -0.1 -0.4 +0.1
stress RCH2_defined_glucose_5mM with Abietic Acid 5 mM -1.2 +0.0 +0.5 +0.0 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 +0.0 +0.1 -0.0 +0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 +0.1 -0.1 +0.3 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.0 +0.4 +0.1 -0.2 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 +0.3 +0.4 -0.4 +0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.8 +0.2 +0.4 +0.2 -0.3
carbon source L-Lactate (C) +0.8 -0.3 -0.3 -0.4 +0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.9 -0.1 +0.3 -1.1 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 +0.4 +0.0 +0.0 +0.7
carbon source Acetylated xylan 10 g/L (C) +1.2 -0.3 -0.7 +0.0 +0.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.9 +0.3 -0.4 +0.1 -0.3
carbon source L-Proline (C) +0.8 +0.3 +0.1 -0.2 -0.3
carbon source Inosine (C) +0.6 +0.0 +0.6 -0.4 +0.3
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +1.1 -0.2 +0.3 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.3 -0.4 +0.4 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +0.2 +0.3 +0.6 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.4 +0.2 +0.2 +0.0 -0.1
carbon source D-Galactose (C) +0.8 +0.4 +0.2 -0.0 +0.4
carbon source D-Glucose-6-Phosphate (C) +1.1 +0.1 +0.2 +0.4 +0.2
carbon source L-Arabinose (C) +1.5 -0.0 +0.3 +0.2 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.0 +0.2 +0.4 +0.2 +0.5
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