Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004279 and ABIE53_004280 overlap by 46 nucleotidesABIE53_004280 and ABIE53_004281 are separated by 130 nucleotidesABIE53_004281 and ABIE53_004282 are separated by 12 nucleotidesABIE53_004282 and ABIE53_004283 are separated by 241 nucleotides ABIE53_004279: ABIE53_004279 - DNA-binding transcriptional LysR family regulator, at 453,954 to 454,517 _004279 ABIE53_004280: ABIE53_004280 - DNA-binding transcriptional LysR family regulator, at 454,472 to 454,885 _004280 ABIE53_004281: ABIE53_004281 - GTP cyclohydrolase I, at 455,016 to 455,666 _004281 ABIE53_004282: ABIE53_004282 - drug/metabolite transporter (DMT)-like permease, at 455,679 to 456,584 _004282 ABIE53_004283: ABIE53_004283 - membrane protein DedA with SNARE-associated domain/rhodanese-related sulfurtransferase, at 456,826 to 457,902 _004283
Group Condition ABIE53_004279 ABIE53_004280 ABIE53_004281 ABIE53_004282 ABIE53_004283
carbon source 4-Hydroxybenzoic Acid (C) -4.4 -4.5 +0.5 +0.1 +0.2
soil extract 4-Hydroxybenzoic Acid 5 mM in soil extract -2.9 -3.6 +0.1 +0.1 -0.1
carbon source 4-Hydroxybenzoic Acid (C) -3.2 -3.3 +0.4 -0.2 +0.2
stress RCH2_defined_glucose_5mM with 4-Hydroxybenzoic Acid 5 mM -2.3 -2.5 +0.1 -0.1 -0.1
soil extract 4-Hydroxybenzoic Acid 5 mM in soil extract -1.9 -2.6 -0.0 +0.0 +0.1
stress RCH2_defined_glucose_5mM with 4-Hydroxybenzoic Acid 5 mM -1.8 -2.6 +0.3 -0.2 +0.1
soil extract Shikimic Acid 5 mM in soil extract -0.7 -1.4 -0.5 -0.6 -0.1
soil extract Shikimic Acid 5 mM in soil extract -0.8 -1.0 -0.9 -0.5 -0.1
stress RCH2_defined_glucose_5mM with caffeic 1 mM -1.0 -0.4 -1.2 -0.2 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.1 -0.5 -1.0 -0.0
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.4 +0.7 -1.0 +0.1 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -1.5 -0.5 +0.3 +0.3
stress RCH2_defined_glucose_5mM with Adenine 4 mM -0.4 -1.3 +0.5 -0.2 +0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.5 +0.4 +0.4 -0.5 +0.1
soil extract Adenine 5 mM in soil extract -0.1 -1.2 +0.4 -0.2 +0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.3 -0.3 -0.6 -0.5 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 -1.0 -0.2 -0.1 +0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 +0.3 -1.1 +0.5 +0.5
carbon source L-Proline (C) +0.6 -0.2 +0.4 -0.7 +0.2
carbon source Tween 20 (C) +0.7 -0.7 +0.6 -0.2 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.0 +0.8 -0.7 -0.1 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.0 +0.1 -0.4 -0.4 +0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.5 +0.5 -0.8 +0.5 +0.1
carbon source L-Histidine (C) +0.5 -0.4 +0.9 -0.1 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.5 +0.7 +0.3 +0.3
r2a outgrowth control R2A outgrowth control +0.5 +0.3 -0.4 +0.6 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.4 -0.3 +0.5 +0.5
carbon source D-Fructose (C) +0.9 -0.2 +1.1 -0.2 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.4 -0.1 +0.0 +0.3 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 -0.0 +0.0 +0.6 +0.5
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