Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004256 and ABIE53_004257 are separated by 31 nucleotidesABIE53_004257 and ABIE53_004258 are separated by 258 nucleotidesABIE53_004258 and ABIE53_004259 overlap by 151 nucleotidesABIE53_004259 and ABIE53_004260 are separated by 151 nucleotides ABIE53_004256: ABIE53_004256 - threonine/homoserine/homoserine lactone efflux protein, at 429,504 to 430,130 _004256 ABIE53_004257: ABIE53_004257 - DNA-binding transcriptional MocR family regulator, at 430,162 to 431,577 _004257 ABIE53_004258: ABIE53_004258 - beta-alanine--pyruvate transaminase, at 431,836 to 433,164 _004258 ABIE53_004259: ABIE53_004259 - hypothetical protein, at 433,014 to 433,739 _004259 ABIE53_004260: ABIE53_004260 - hypothetical protein, at 433,891 to 434,142 _004260
Group Condition ABIE53_004256 ABIE53_004257 ABIE53_004258 ABIE53_004259 ABIE53_004260
carbon source Uridine (C) -0.3 -1.8 -2.2 -2.1 +0.5
carbon source Uridine (C) +0.0 -1.9 -3.0 -1.3 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.2 -0.2 -0.8 -3.2 -0.5
carbon source butyrate (C) -0.2 +0.0 +0.3 -4.1 -0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.1 -0.2 -2.5 -1.3
stress RCH2_defined_glucose_5mM with Adenine 2 mM -0.3 -0.3 -0.1 -3.9 +0.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.0 +0.3 -3.7 -0.3
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.3 +0.6 +0.8 -4.0 -1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.5 -1.1 -1.6 -0.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.1 -0.4 +0.6 -3.8 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.7 +0.1 -0.8 -2.9 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +0.4 -0.2 -4.1 +1.2
stress RCH2_defined_glucose_5mM with Adenine 5 mM -0.4 -0.5 -0.2 -2.3 +0.8
carbon source L-Proline (C) -0.0 +0.0 +0.0 -3.8 +1.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.0 +0.4 -3.0 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 +0.0 -0.4 -2.6 +1.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.9 -0.5 -2.5 +0.8
carbon source D-Trehalose (C) -0.2 +0.2 -0.0 -2.1 +1.1
carbon source D,L-Malic Acid (C) -0.0 -0.4 +0.0 -1.9 +1.3
carbon source D-Sorbitol (C) -0.2 +0.4 +0.2 -1.9 +0.8
biofilm biofilm; planktonic cells from 96 well plate assay in R2A -0.0 +0.5 +0.3 -2.2 +0.9
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -0.5 -0.1 -0.2 +1.8 -0.8
carbon source Tween 20 (C) -0.1 +0.4 +0.4 -1.2 +1.5
carbon source L-Histidine (C) -0.2 +0.3 +0.2 -0.9 +2.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.6 -1.0 +0.7 +1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.5 -0.5 +2.0 +0.7
carbon source D-Sorbitol (C) -0.4 +0.4 -0.0 +1.0 +1.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.0 -0.4 +1.5 +1.5
stress R2A with Tricalcium phosphate 0.5 g/L +0.2 +0.3 +0.5 +1.8 +0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.0 +0.1 +2.6 +2.2
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