Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004243 and ABIE53_004244 are separated by 187 nucleotidesABIE53_004244 and ABIE53_004245 are separated by 79 nucleotidesABIE53_004245 and ABIE53_004246 are separated by 309 nucleotidesABIE53_004246 and ABIE53_004247 are separated by 36 nucleotides ABIE53_004243: ABIE53_004243 - GntR family transcriptional regulator/MocR family aminotransferase, at 419,049 to 420,458 _004243 ABIE53_004244: ABIE53_004244 - nitroreductase, at 420,646 to 421,263 _004244 ABIE53_004245: ABIE53_004245 - FMN-dependent NADH-azoreductase, at 421,343 to 421,993 _004245 ABIE53_004246: ABIE53_004246 - NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family), at 422,303 to 423,013 _004246 ABIE53_004247: ABIE53_004247 - AraC family transcriptional activator of mtrCDE, at 423,050 to 424,006 _004247
Group Condition ABIE53_004243 ABIE53_004244 ABIE53_004245 ABIE53_004246 ABIE53_004247
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -3.5 -2.3 -0.0 -0.5
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -0.4 -1.6 -1.6 -0.1 -0.1
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 -0.7 -1.6 -1.0 -0.0 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.0 -0.5 -2.4 -0.2 -0.2
soil extract Indole-3-pyruvic 5 mM in soil extract -0.5 +0.3 -2.0 -0.3 -0.8
nitrogen source histamine 2mM N source +0.1 +0.1 -3.9 +0.2 +0.5
stress RCH2_defined_glucose_5mM with caffeic 1 mM -1.1 -1.2 -0.9 +0.0 +0.0
stress RCH2_defined_glucose_5mM with Sucrose 5 mM -0.5 -2.8 +1.0 +0.1 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.7 -0.6 -1.8 +0.0 -1.1
soil extract Serotonin 5 mM in soil extract -1.0 -1.1 +0.2 -0.0 -0.8
stress RCH2_defined_glucose_5mM with Abietic Acid 5 mM -0.3 -0.9 -1.8 -0.0 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -2.0 +0.2 -0.6 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.2 -1.0 +0.4 -1.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.1 -2.4 +0.2 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.2 -1.3 -1.3 -0.3 +0.4
plant outgrowth control Plant outgrowth control -0.4 +0.1 -2.3 +0.6 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.7 -1.7 +0.3 +0.1
stress M9 with Chloride 200 mM -0.2 +0.5 -1.6 +0.3 -0.8
stress RCH2_defined_glucose_5mM with Serotonin 5 mM -0.6 -0.6 +0.8 -0.6 -0.6
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.3 -0.9 -1.0 -0.4 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 +0.7 -1.3 +0.2 -0.1
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -0.5 -0.9 +1.1 -0.2 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -1.4 +0.5 +0.4 +0.3
carbon source D,L-Malic Acid (C) -1.2 +0.7 +0.9 +0.2 -1.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.0 -1.4 +0.5 +0.1 +1.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.6 -1.5 +1.4 +0.8 +0.2
carbon source D-Serine (C) -0.6 +0.0 +1.3 +0.6 +0.8
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.2 +0.8 +0.6 +1.4 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 +0.4 +2.9 +0.0 +0.6
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 +2.6 +0.2 +0.8 +0.2
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ABIE53_004243
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ABIE53_004244
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ABIE53_004247
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