Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004202 and ABIE53_004203 are separated by 29 nucleotidesABIE53_004203 and ABIE53_004204 are separated by 195 nucleotidesABIE53_004204 and ABIE53_004205 are separated by 237 nucleotidesABIE53_004205 and ABIE53_004206 are separated by 78 nucleotides ABIE53_004202: ABIE53_004202 - H+/Cl- antiporter ClcA/CBS domain-containing protein, at 373,832 to 375,631 _004202 ABIE53_004203: ABIE53_004203 - uncharacterized protein (DUF488 family), at 375,661 to 376,206 _004203 ABIE53_004204: ABIE53_004204 - hypothetical protein, at 376,402 to 377,493 _004204 ABIE53_004205: ABIE53_004205 - hypothetical protein, at 377,731 to 379,578 _004205 ABIE53_004206: ABIE53_004206 - hypothetical protein, at 379,657 to 379,959 _004206
Group Condition ABIE53_004202 ABIE53_004203 ABIE53_004204 ABIE53_004205 ABIE53_004206
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -2.7 -2.2 +0.2 -0.3 -0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.1 -1.3 -0.3 +0.1 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.8 -0.1 -0.1 -0.4 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.8 -0.8 -0.3 -0.3 -0.0
carbon source D-Lactate (C) -0.3 -2.2 +0.0 +0.1 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -1.2 -0.2 -0.4 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.4 -0.1 +0.0 -0.1 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.5 -0.4 +0.4 -0.0 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.8 -1.4 +0.1 +0.3 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -1.1 -0.6 -0.2 -0.8
stress R2A with Tricalcium phosphate 0.5 g/L -0.3 -2.2 -0.2 -0.3 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.7 -0.8 -0.2 -0.1 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 -1.2 -0.4 -0.3 +0.5
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.3 +0.5 -0.8 -0.0 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.1 +0.7 -0.0 -0.4 -0.3
motility_chemotaxis Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut -0.5 -1.9 +0.5 -0.1 -0.0
stress R2A with Propan-1-ol 13 g/L -1.7 +0.5 -0.2 +0.0 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.5 +0.4 +0.0 +0.2 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.4 +1.4 -0.0 -0.3 -0.6
carbon source D-Serine (C) +0.5 -1.2 -0.8 +0.0 -0.5
carbon source Acetylated xylan 10 g/L (C) -1.6 -0.6 +0.1 -0.3 +0.6
stress RCH2_defined_glucose_5mM with Adenine 4 mM +0.9 -1.3 -0.4 -0.1 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.8 -0.6 -0.7 +0.5 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.0 +0.4 -0.1 +0.4 +0.3
r2a outgrowth control R2A outgrowth control +0.6 -0.9 -0.4 -0.4 +0.7
carbon source Acetylated xylan 10 g/L (C) +1.7 -1.0 +0.2 -0.5 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 +1.3 +0.4 -0.2 +0.2
stress RCH2_defined_glucose_5mM with L-Proline 5 mM -0.8 +1.3 -0.3 -0.1 +0.6
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.1 +0.5 +0.4 -0.1 +1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 +0.9 -0.0 +0.2 +0.9
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