Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004186 and ABIE53_004187 are separated by 16 nucleotidesABIE53_004187 and ABIE53_004188 overlap by 20 nucleotidesABIE53_004188 and ABIE53_004189 are separated by 76 nucleotidesABIE53_004189 and ABIE53_004190 are separated by 29 nucleotides ABIE53_004186: ABIE53_004186 - cytidine deaminase, at 360,690 to 361,079 _004186 ABIE53_004187: ABIE53_004187 - nucleoside permease NupC, at 361,096 to 361,236 _004187 ABIE53_004188: ABIE53_004188 - nucleoside transporter, at 361,217 to 362,374 _004188 ABIE53_004189: ABIE53_004189 - hypothetical protein, at 362,451 to 362,660 _004189 ABIE53_004190: ABIE53_004190 - hypothetical protein, at 362,690 to 362,935 _004190
Group Condition ABIE53_004186 ABIE53_004187 ABIE53_004188 ABIE53_004189 ABIE53_004190
carbon source L-Tryptophan (C) -0.1 N.D. +0.1 -4.6 N.D.
plant outgrowth control Plant outgrowth control -2.6 N.D. -0.1 -1.8 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 N.D. -0.1 -3.8 N.D.
carbon source D-Fructose (C) -0.7 N.D. -0.2 -3.2 N.D.
carbon source Shikimic Acid 5 mM (C) -1.4 N.D. -0.9 -1.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 N.D. -1.2 -1.7 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 N.D. +0.1 -3.2 N.D.
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 N.D. -0.4 -1.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 N.D. +0.4 -2.4 N.D.
soil extract Chlorogenic 5 mM in soil extract -0.4 N.D. -0.5 -1.9 N.D.
plant outgrowth control Plant outgrowth control -0.8 N.D. -0.6 -1.4 N.D.
stress R2A with Propan-1-ol 13 g/L +0.2 N.D. -0.4 -2.6 N.D.
stress R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM -0.3 N.D. -0.4 -2.0 N.D.
carbon source D,L-Malic Acid (C) -0.5 N.D. -0.1 -2.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 N.D. -0.5 -2.1 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.4 N.D. -0.0 -2.3 N.D.
soil extract D-Glucose 5 mM in soil extract +0.8 N.D. +0.2 -3.6 N.D.
stress RCH2_defined_glucose_5mM with 2,3-dihydroxybenzoic 5 mM -0.5 N.D. +0.3 -2.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 N.D. +0.4 -2.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 N.D. +0.6 -1.6 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 N.D. +0.5 -1.4 N.D.
stress RCH2_defined_glucose_5mM with 4-Pyridoxic 5 mM -0.2 N.D. +0.7 -2.6 N.D.
carbon source D-Mannose (C) +0.1 N.D. +0.5 -2.4 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 N.D. -1.0 +1.6 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 N.D. -0.6 +1.9 N.D.
carbon source Uridine (C) +0.2 N.D. -1.8 +3.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.5 N.D. +0.9 +1.6 N.D.
carbon source Uridine (C) +0.2 N.D. -1.2 +3.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 N.D. -0.7 +3.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 N.D. +0.9 +2.7 N.D.
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