Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_004185	ABIE53_004186	ABIE53_004187	ABIE53_004188	ABIE53_004189
carbon source	D-Fructose (C)	-0.6	-0.7	N.D.	-0.2	-3.2
plant outgrowth control	Plant outgrowth control	+0.1	-2.6	N.D.	-0.1	-1.8
carbon source	L-Tryptophan (C)	+0.3	-0.1	N.D.	+0.1	-4.6
carbon source	Shikimic Acid 5 mM (C)	-0.5	-1.4	N.D.	-0.9	-1.2
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	-0.3	N.D.	-0.1	-3.8
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.0	-0.6	N.D.	-1.2	-1.7
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.2	-0.0	N.D.	+0.1	-3.2
carbon source	D-Glucose-6-Phosphate (C)	-0.8	-0.2	N.D.	-0.5	-1.9
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.6	-0.4	N.D.	-0.0	-2.3
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.3	-1.1	N.D.	-0.4	-1.4
carbon source	D,L-Malic Acid (C)	-0.4	-0.5	N.D.	-0.1	-2.1
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	-0.2	-0.3	N.D.	-0.4	-2.0
stress	R2A with Propan-1-ol 13 g/L	-0.1	+0.2	N.D.	-0.4	-2.6
soil extract	Chlorogenic 5 mM in soil extract	+0.2	-0.4	N.D.	-0.5	-1.9
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.4	-0.9	N.D.	+0.4	-2.4
plant outgrowth control	Plant outgrowth control	+0.4	-0.8	N.D.	-0.6	-1.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.1	-0.5	N.D.	+0.4	-2.1
stress	RCH2_defined_glucose_5mM with 4-Pyridoxic 5 mM	-0.2	-0.2	N.D.	+0.7	-2.6
soil extract	D-Glucose 5 mM in soil extract	+0.4	+0.8	N.D.	+0.2	-3.6
stress	RCH2_defined_glucose_5mM with 2,3-dihydroxybenzoic 5 mM	+0.2	-0.5	N.D.	+0.3	-2.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	-1.2	N.D.	+0.5	-1.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	-1.2	N.D.	+0.6	-1.6
carbon source	Uridine (C)	-3.6	+0.2	N.D.	-1.2	+3.0
carbon source	Uridine (C)	-3.3	+0.2	N.D.	-1.8	+3.5
carbon source	D-Mannose (C)	+0.4	+0.1	N.D.	+0.5	-2.4
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.9	+0.6	N.D.	+0.6	-1.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.4	-0.5	N.D.	+0.9	+1.6
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.2	+0.0	N.D.	-0.7	+3.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.1	-0.7	N.D.	+0.9	+2.7
soil extract	Sucrose 5 mM in soil extract	+0.5	+0.4	N.D.	+0.7	+1.4