Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004170 and ABIE53_004171 are separated by 2 nucleotidesABIE53_004171 and ABIE53_004172 are separated by 1 nucleotidesABIE53_004172 and ABIE53_004173 overlap by 4 nucleotidesABIE53_004173 and ABIE53_004174 are separated by 155 nucleotides ABIE53_004170: ABIE53_004170 - oligopeptide transport system permease protein, at 344,545 to 345,483 _004170 ABIE53_004171: ABIE53_004171 - oligopeptide transport system permease protein, at 345,486 to 346,400 _004171 ABIE53_004172: ABIE53_004172 - oligopeptide transport system ATP-binding protein, at 346,402 to 347,424 _004172 ABIE53_004173: ABIE53_004173 - oligopeptide transport system ATP-binding protein, at 347,421 to 348,440 _004173 ABIE53_004174: ABIE53_004174 - hypothetical protein, at 348,596 to 350,158 _004174
Group Condition ABIE53_004170 ABIE53_004171 ABIE53_004172 ABIE53_004173 ABIE53_004174
stress RCH2_defined_glucose_5mM with Lumazine 5 mM -2.5 -0.2 -0.3 N.D. -0.4
phage Burk1_100 -1.9 -0.3 -0.4 N.D. -0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.5 -2.1 -0.2 N.D. +0.7
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.8 -1.8 +0.2 N.D. -0.3
stress RCH2_defined_glucose_5mM with Adenine 4 mM -2.1 -0.6 -0.1 N.D. +0.1
stress R2A with 3-methyl-3-butenol 4.5 g/L -2.3 -0.3 -0.0 N.D. +0.2
stress RCH2_defined_glucose_5mM with Guanine 5 mM -0.7 -1.4 -0.1 N.D. -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -1.3 -0.7 N.D. -0.6
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -1.1 -0.1 N.D. -0.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 -2.0 -0.4 N.D. +0.1
r2a outgrowth control R2A outgrowth control -1.7 -0.1 +0.2 N.D. -0.4
plant outgrowth control Plant outgrowth control -1.3 -1.8 +0.9 N.D. +0.3
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -2.0 +0.2 -0.1 N.D. +0.2
stress RCH2_defined_glucose_5mM with Pyridoxal 0.5 mM -0.7 -1.3 +0.5 N.D. -0.2
soil extract Indole-3-pyruvic 5 mM in soil extract +0.6 -1.4 -0.2 N.D. -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.1 -0.5 +0.5 N.D. -0.1
plant outgrowth control Plant outgrowth control -0.6 -1.4 +0.7 N.D. -0.0
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.6 -0.4 +1.0 N.D. -0.3
carbon source Inosine (C) -1.3 +0.6 -0.1 N.D. -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.9 +0.6 +0.2 N.D. +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -0.4 +0.7 N.D. -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 -0.9 +0.8 N.D. +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 -1.2 -0.3 N.D. -0.1
carbon source Acetylated xylan 10 g/L (C) +0.1 -1.5 +0.3 N.D. +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.3 +0.6 +0.3 N.D. +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.2 -0.4 -0.5 N.D. -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.1 +0.4 -0.8 N.D. +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 -0.1 +1.2 N.D. -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +1.4 +0.1 N.D. -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.1 +0.7 +0.5 N.D. +0.2
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