Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_004152	ABIE53_004153	ABIE53_004154	ABIE53_004155	ABIE53_004156
carbon source	L-Alanine (C)	-4.9	-0.1	+0.0	-0.1	-0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-3.6	-0.3	-0.3	-0.9	+0.7
motility_chemotaxis	Motility_chemotaxis, R2A; inner cut	-3.1	+0.0	-0.2	-0.7	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-2.8	-0.3	-0.3	-0.5	-0.0
stress	R2A with Ethanol 2.5 vol%	-2.7	-0.4	-0.2	-0.1	-0.2
stress	R2A with Propan-1-ol 13 g/L	-2.9	-0.4	-0.1	-0.4	+0.4
motility_chemotaxis	Motility_chemotaxis, R2A; outer cut	-2.2	+0.0	-0.2	-0.6	-0.5
carbon source	Adenosine (C)	-2.7	+0.0	-0.0	-0.4	-0.4
carbon source	Glucuronamide (C)	-2.2	-0.1	-0.1	-0.8	-0.1
stress	R2A with Propan-1-ol 13 g/L	-2.2	-0.5	-0.3	-0.5	+0.1
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-2.0	-0.5	-0.4	-0.4	+0.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.5	-0.4	-0.4	-0.3	-0.7
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-3.3	-0.2	-0.2	+0.4	+0.1
stress	R2A with Isopropyl alcohol 21 g/L	-2.1	-0.4	-0.1	-0.1	-0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-1.1	-0.2	-0.0	-1.6	-0.0
carbon source	D-Glucose-6-Phosphate (C)	-2.8	-0.0	+0.0	-0.2	+0.1
motility_chemotaxis	Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut	-2.3	+0.1	-0.2	-0.3	-0.2
stress	RCH2_defined_glucose_5mM with Adenine 5 mM	-2.4	-0.1	-0.2	-0.2	+0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.5	-0.2	-0.3	-0.7	+0.1
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-2.5	-0.1	+0.1	-0.1	+0.2
carbon source	D-Gluconic Acid (C)	-2.1	-0.1	+0.0	+0.5	+0.1
soil extract	Indole-3-pyruvic 5 mM in soil extract	-2.2	-0.1	-0.0	+0.7	+0.3
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+1.3	-0.4	-0.1	-1.4	-0.1
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+1.1	-0.3	-0.1	-0.8	-0.4
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+1.3	-0.2	-0.2	-1.4	+0.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+1.4	-0.0	+0.0	-1.2	+0.3
carbon source	Shikimic Acid 5 mM (C)	+1.7	-0.1	-0.1	-0.9	+0.1
carbon source	Acetylated xylan 10 g/L (C)	+2.0	+0.1	+0.1	-0.6	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+2.0	+0.1	-0.5	-0.2	+0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+2.4	-0.2	-0.5	-0.0	+0.8