Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004136 and ABIE53_004137 are separated by 57 nucleotidesABIE53_004137 and ABIE53_004138 are separated by 66 nucleotidesABIE53_004138 and ABIE53_004139 are separated by 252 nucleotidesABIE53_004139 and ABIE53_004140 are separated by 81 nucleotides ABIE53_004136: ABIE53_004136 - D-amino-acid dehydrogenase, at 308,941 to 310,173 _004136 ABIE53_004137: ABIE53_004137 - hypothetical protein, at 310,231 to 310,557 _004137 ABIE53_004138: ABIE53_004138 - diguanylate cyclase (GGDEF)-like protein, at 310,624 to 312,048 _004138 ABIE53_004139: ABIE53_004139 - LysR family transcriptional regulator of abg operon, at 312,301 to 313,251 _004139 ABIE53_004140: ABIE53_004140 - SSS family solute:Na+ symporter, at 313,333 to 314,814 _004140
Group Condition ABIE53_004136 ABIE53_004137 ABIE53_004138 ABIE53_004139 ABIE53_004140
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 N.D. -0.8 -0.5 -0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 N.D. +0.1 +0.2 -1.8
stress RCH2_defined_glucose_5mM with Adenine 5 mM -0.4 N.D. +0.0 -0.5 -1.5
carbon source D-Galactose (C) -1.7 N.D. -0.4 -0.2 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 N.D. -0.1 -0.2 -1.0
carbon source D-Xylose (C) -1.2 N.D. -0.0 -0.7 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 N.D. +0.2 -0.9 -0.6
carbon source D-Alanine (C) -0.9 N.D. -0.1 +0.5 -1.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 N.D. -0.9 +0.3 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 N.D. -1.2 -0.4 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.3 N.D. -0.2 +0.4 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 N.D. -0.0 -1.4 -0.3
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 N.D. -0.4 -1.2 -0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 N.D. +0.4 -0.1 -2.1
carbon source Beta-Lactose (C) -1.5 N.D. -0.2 +0.5 +0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.8 N.D. +0.4 -0.7 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.0 N.D. -0.0 -0.1 -1.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.1 N.D. -0.9 -0.6 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.7 N.D. +0.1 +1.0 -0.2
carbon source D-Lactate (C) -1.2 N.D. -0.4 -0.5 +1.2
carbon source D-Alanine (C) +0.1 N.D. +0.2 +0.5 -1.5
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.7 N.D. -0.8 +0.5 +0.3
stress RCH2_defined_glucose_5mM with Lumazine 5 mM -0.3 N.D. -0.4 -0.6 +0.7
carbon source D-Lactate (C) -0.2 N.D. -0.4 -1.0 +1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 N.D. +0.4 -0.8 -0.3
stress RCH2_defined_glucose_5mM with Lumazine 5 mM +0.4 N.D. -0.7 -0.4 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.4 N.D. -0.1 -0.8 -0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 N.D. +0.0 +0.6 -0.7
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.8 N.D. +0.3 +0.6 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.9 N.D. +0.2 +0.4 -0.3
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