Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004126 and ABIE53_004127 are separated by 169 nucleotidesABIE53_004127 and ABIE53_004128 are separated by 310 nucleotidesABIE53_004128 and ABIE53_004129 are separated by 56 nucleotidesABIE53_004129 and ABIE53_004130 are separated by 16 nucleotides ABIE53_004126: ABIE53_004126 - acetyl esterase, at 297,418 to 298,413 _004126 ABIE53_004127: ABIE53_004127 - CheY-like chemotaxis protein, at 298,583 to 299,554 _004127 ABIE53_004128: ABIE53_004128 - HAD superfamily hydrolase (TIGR01509 family), at 299,865 to 300,539 _004128 ABIE53_004129: ABIE53_004129 - hypothetical protein, at 300,596 to 301,243 _004129 ABIE53_004130: ABIE53_004130 - flagellar motor protein MotB, at 301,260 to 301,916 _004130
Group Condition ABIE53_004126 ABIE53_004127 ABIE53_004128 ABIE53_004129 ABIE53_004130
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 -1.1 +0.3 -0.9 -3.6
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.1 -0.7 -0.0 -0.2 -3.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -0.5 -0.1 +0.1 -3.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.8 -0.1 -0.5 -2.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -0.3 +0.4 +0.4 -4.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -0.3 +0.1 -0.0 -3.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.4 -0.5 -0.3 -0.6 -2.4
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -0.2 -0.4 +0.1 -0.9 -1.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.2 -0.0 -0.3 -2.9
carbon source Glucuronamide (C) +0.1 +0.1 +0.0 -0.7 -2.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.0 -0.5 -0.5 -0.6 -1.2
stress R2A with N-(3-oxohexanoyl)-DL-homoserine lactone 10 uM -0.1 +0.0 -0.0 -0.5 -2.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -0.2 +0.0 -0.4 -2.2
phage Burk2_10 +0.0 -0.1 -0.1 -0.2 -2.4
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 0.5 mM +0.0 -0.2 +0.2 -0.4 -2.0
stress R2A with Isopropyl alcohol 21 g/L -0.0 +0.1 -0.2 +0.1 -2.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 -1.1 +0.0 +0.2 -1.5
carbon source m-Inositol (C) +0.3 -0.1 +0.2 -0.2 -2.4
stress R2A with Tricalcium phosphate 0.5 g/L +0.1 -0.1 +0.3 -0.1 -2.1
carbon source D-Galactose (C) +0.3 -0.0 +0.2 +0.0 -2.4
carbon source D-Glucose (C) +0.2 -0.0 +0.2 +0.6 -2.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.0 +0.4 -0.3 -1.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.4 +0.1 -0.5 -1.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.3 +0.4 +0.7 -2.7
carbon source D-Fructose (C) +0.5 -0.0 +0.6 +0.1 -2.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.4 +0.7 -0.4 -1.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.6 -0.2 +0.8 -1.0
stress RCH2_defined_glucose_5mM with Adenine 2 mM +0.3 +1.1 +0.3 +0.0 -1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.4 +0.1 -0.5 +1.6
stress RCH2_defined_glucose_5mM with Adenine 4 mM +0.2 +1.3 +0.1 +0.5 -0.5
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