Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004117 and ABIE53_004118 are separated by 12 nucleotidesABIE53_004118 and ABIE53_004119 are separated by 8 nucleotidesABIE53_004119 and ABIE53_004120 are separated by 73 nucleotidesABIE53_004120 and ABIE53_004121 are separated by 111 nucleotides ABIE53_004117: ABIE53_004117 - 4-aminobutyrate aminotransferase, at 289,149 to 290,438 _004117 ABIE53_004118: ABIE53_004118 - hypothetical protein, at 290,451 to 290,573 _004118 ABIE53_004119: ABIE53_004119 - succinate-semialdehyde dehydrogenase/glutarate-semialdehyde dehydrogenase, at 290,582 to 291,910 _004119 ABIE53_004120: ABIE53_004120 - hypothetical protein, at 291,984 to 292,307 _004120 ABIE53_004121: ABIE53_004121 - AraC family carnitine catabolism transcriptional activator, at 292,419 to 293,462 _004121
Group Condition ABIE53_004117 ABIE53_004118 ABIE53_004119 ABIE53_004120 ABIE53_004121
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -3.4 +0.2 -0.1 -1.2 -0.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -2.4 -0.5 -0.1 -0.9 -0.0
stress RCH2_defined_glucose_5mM with caffeic 1 mM -2.7 -0.6 -0.4 -0.3 +0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -2.8 -0.7 +0.0 -0.0 +0.0
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -2.6 -0.7 +0.3 -0.4 -0.1
stress RCH2_defined_glucose_5mM with caffeic 0.5 mM -2.9 -0.2 -0.2 -0.2 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.1 +0.0 +0.3 +0.1 -0.3
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -2.4 -0.6 +0.2 -0.1 +0.0
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -2.3 -0.6 +0.1 +0.1 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.5 +0.3 +0.2 -0.4 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.8 +0.1 -0.0 +0.2 +0.1
stress RCH2_defined_glucose_5mM with caffeic 0.5 mM -2.2 -0.4 -0.1 +0.1 +0.2
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -2.2 -0.1 -0.2 -0.2 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.5 +0.2 +0.0 +0.5 +0.5
stress RCH2_defined_glucose_5mM with caffeic 1 mM -2.2 -1.0 +0.1 +0.4 +0.4
r2a outgrowth control R2A outgrowth control -1.5 -1.0 +0.4 -0.2 +0.2
r2a outgrowth control R2A outgrowth control -1.5 -1.3 +0.3 +0.1 +0.3
stress RCH2_defined_glucose_5mM with Sucrose 5 mM +0.2 -1.0 -0.2 -1.2 +0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.9 -0.5 +0.3 -0.4 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.2 -0.3 +0.1 +0.7 -0.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.8 -0.1 -0.2 +0.7 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 -0.8 -0.4 +0.6 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.5 -0.6 -0.1 +0.8 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 -0.2 -0.3 +0.7 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.6 +0.7 +0.1 -0.3 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.7 +0.5 +0.1 +0.7 -0.1
stress M9 with 3-methyl-2-butenol 2 g/L +0.9 -1.6 +0.0 +0.4 -0.1
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.5 +0.7 +0.2 +0.7 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 +0.2 +0.3 +1.1 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.6 +0.5 +0.2 +0.4 +0.8
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