Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004115 and ABIE53_004116 are separated by 209 nucleotidesABIE53_004116 and ABIE53_004117 are separated by 156 nucleotidesABIE53_004117 and ABIE53_004118 are separated by 12 nucleotidesABIE53_004118 and ABIE53_004119 are separated by 8 nucleotides ABIE53_004115: ABIE53_004115 - hypothetical protein, at 286,831 to 287,946 _004115 ABIE53_004116: ABIE53_004116 - drug/metabolite transporter (DMT)-like permease, at 288,156 to 288,992 _004116 ABIE53_004117: ABIE53_004117 - 4-aminobutyrate aminotransferase, at 289,149 to 290,438 _004117 ABIE53_004118: ABIE53_004118 - hypothetical protein, at 290,451 to 290,573 _004118 ABIE53_004119: ABIE53_004119 - succinate-semialdehyde dehydrogenase/glutarate-semialdehyde dehydrogenase, at 290,582 to 291,910 _004119
Group Condition ABIE53_004115 ABIE53_004116 ABIE53_004117 ABIE53_004118 ABIE53_004119
stress RCH2_defined_glucose_5mM with caffeic 1 mM -0.1 -0.0 -2.7 -0.6 -0.4
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.0 -0.1 -2.8 -0.7 +0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.0 -3.5 +0.2 +0.0
stress RCH2_defined_glucose_5mM with caffeic 0.5 mM +0.0 +0.0 -2.9 -0.2 -0.2
stress RCH2_defined_glucose_5mM with caffeic 1 mM -0.0 +0.2 -2.2 -1.0 +0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.0 +0.1 -2.4 -0.6 +0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.1 +0.1 -2.6 -0.7 +0.3
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM +0.1 +0.0 -2.3 -0.6 +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.1 -2.8 +0.1 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.1 -0.2 -2.2 -0.3 +0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 +0.5 -3.4 +0.2 -0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.1 +0.3 -2.4 -0.5 -0.1
stress RCH2_defined_glucose_5mM with caffeic 0.5 mM +0.2 +0.0 -2.2 -0.4 -0.1
r2a outgrowth control R2A outgrowth control +0.2 +0.0 -1.5 -1.3 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.2 -1.1 -0.8 -0.4
soil extract Indole-3-pyruvic 5 mM in soil extract +0.2 -0.3 -1.5 -0.7 +0.0
r2a outgrowth control R2A outgrowth control -0.3 +0.2 -1.5 -1.0 +0.4
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.3 +0.2 -1.8 -0.1 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +0.3 -3.1 +0.0 +0.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.5 +0.1 -1.9 -0.5 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.4 -2.0 -0.1 -0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.4 -2.5 +0.3 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.1 -1.7 -0.3 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.3 -1.6 +0.5 +0.2
stress M9 with 3-methyl-2-butenol 2 g/L -0.0 -0.0 +0.9 -1.6 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +0.1 -1.6 +0.7 +0.1
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.3 -1.5 +0.7 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.1 -0.7 +1.3 -0.2
plant outgrowth control Plant outgrowth control +0.2 +0.3 +1.5 +0.5 +0.3
plant outgrowth control Plant outgrowth control +0.2 +0.4 +1.9 +0.4 +0.0
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