Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004100 and ABIE53_004101 are separated by 223 nucleotidesABIE53_004101 and ABIE53_004102 overlap by 8 nucleotidesABIE53_004102 and ABIE53_004103 are separated by 18 nucleotidesABIE53_004103 and ABIE53_004104 are separated by 104 nucleotides ABIE53_004100: ABIE53_004100 - alkylation response protein AidB-like acyl-CoA dehydrogenase, at 264,058 to 265,260 _004100 ABIE53_004101: ABIE53_004101 - D-methionine transport system permease protein, at 265,484 to 266,140 _004101 ABIE53_004102: ABIE53_004102 - D-methionine transport system ATP-binding protein, at 266,133 to 267,293 _004102 ABIE53_004103: ABIE53_004103 - FMN-dependent oxidoreductase (nitrilotriacetate monooxygenase family), at 267,312 to 268,649 _004103 ABIE53_004104: ABIE53_004104 - D-methionine transport system substrate-binding protein, at 268,754 to 269,593 _004104
Group Condition ABIE53_004100 ABIE53_004101 ABIE53_004102 ABIE53_004103 ABIE53_004104
plant outgrowth control Plant outgrowth control -0.3 -0.0 -1.0 -0.4 -1.1
r2a outgrowth control R2A outgrowth control -0.0 -0.3 -0.6 -0.5 -0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.8 -0.1 -0.3 -0.4
soil extract Adenine 5 mM in soil extract -0.6 +0.2 -0.7 +0.1 -0.4
plant outgrowth control Plant outgrowth control +0.2 +0.1 -0.7 -0.2 -0.7
carbon source L-Fucose (C) -0.3 -0.0 -1.2 +0.3 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.2 -1.0 +0.2 -0.3
carbon source Shikimic Acid 5 mM (C) +0.1 -0.3 +0.7 -0.3 -1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.6 -0.2 +0.4 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +0.1 -1.1 +0.4 -0.2
stress R2A with Chloride 200 mM -0.2 +0.2 +0.3 -0.3 -0.8
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.5 +0.0 +0.5 -0.1 -0.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -0.1 +0.6 +0.0 -0.3
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.1 -0.0 -1.2 +0.1 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 +0.1 +0.6 +0.1 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.4 -0.5 +0.4 +0.3
carbon source Acetylated xylan 10 g/L (C) +0.1 +0.1 +1.2 -0.3 -0.9
carbon source L-Proline (C) +0.1 +0.2 -0.9 +0.3 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.7 -0.7 +0.2 -0.1
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.2 +0.4 -0.5 +0.2 +0.4
carbon source Tween 20 (C) -0.6 -0.0 +0.3 +0.4 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.5 -0.2 +0.7 +0.1 +0.4
carbon source Acetylated xylan 10 g/L (C) +0.3 +0.4 +1.0 -0.0 -1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.1 +1.0 +0.1 -0.8
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.3 -0.2 +0.8 +0.3 +0.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.0 +0.3 +0.7 +0.1 +0.8
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.1 +0.5 +1.6 +0.2 -0.3
stress RCH2_defined_glucose_5mM with caffeic 1 mM +0.7 +0.9 +0.6 +0.3 +0.0
soil extract Indole-3-pyruvic 5 mM in soil extract +0.6 +0.9 +0.5 +0.5 +0.1
soil extract Indole-3-pyruvic 5 mM in soil extract +1.0 +1.3 +0.2 -0.2 +0.5
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