Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_004094	ABIE53_004095	ABIE53_004096	ABIE53_004097	ABIE53_004098
motility_chemotaxis	Motility_chemotaxis, R2A; outer cut	+0.8	+0.0	-0.2	-4.0	-3.5
motility_chemotaxis	Motility_chemotaxis, R2A; outer cut	+0.3	+0.3	-0.0	-4.3	-3.0
soil extract	Serotonin 5 mM in soil extract	-3.9	-0.8	-0.1	+0.2	+0.2
soil extract	Adenine 5 mM in soil extract	-2.8	-1.0	-0.0	+0.9	+0.5
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-3.4	-0.8	-0.0	+1.2	+1.0
carbon source	L-Proline (C)	-2.7	-0.9	+0.1	+1.2	+0.8
stress	RCH2_defined_glucose_5mM with Abietic Acid 5 mM	-2.8	-0.4	+0.4	+1.1	+0.7
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-3.2	+0.7	+0.5	+0.9	+0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-2.9	+0.5	+0.2	+0.8	+1.1
carbon source	D-Galactose (C)	-1.1	-1.1	+0.1	+1.9	+1.0
carbon source	L-Glutamine (C)	-2.2	-0.1	+0.0	+1.9	+1.4
carbon source	D-Trehalose (C)	-1.7	-0.2	-0.1	+2.3	+1.8
carbon source	D-Fructose (C)	-1.6	-0.1	+0.1	+2.3	+1.6
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.9	-1.3	+0.1	+1.0	+0.8
carbon source	L-Fucose (C)	-1.8	+0.8	+0.2	+2.2	+1.6
carbon source	D-Xylose (C)	-0.1	-0.8	-0.0	+2.3	+1.8
carbon source	D-Sorbitol (C)	+1.0	-1.3	-0.1	+2.0	+1.5
carbon source	Xylitol (C)	-1.1	+0.5	+0.0	+3.2	+2.5
carbon source	Acetylated xylan 10 g/L (C)	+1.0	+1.2	+0.0	+1.1	+1.7
stress	R2A with Clay 500 g/L	+2.3	+0.8	+0.1	+1.3	+0.7
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.2	+0.2	-0.1	+2.4	+1.6
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	+2.1	+0.3	+0.1	+1.9	+0.9
motility_chemotaxis	Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut	+2.2	+1.1	+0.3	+1.3	+0.6
carbon source	Pectin 10 g/L (C)	+2.6	+0.5	-0.0	+1.5	+0.9
carbon source	D-Fructose (C)	+1.0	+0.5	+0.2	+2.4	+1.7
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.1	+0.8	+0.6	+2.1	+1.3
motility_chemotaxis	Motility_chemotaxis, R2A; inner cut	+2.7	+0.4	-0.1	+1.9	+1.1
carbon source	m-Inositol (C)	+0.8	+0.0	+0.1	+3.1	+2.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.6	+0.9	+0.6	+1.9	+1.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.9	+0.8	-0.1	+2.5	+1.7