Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_004072	ABIE53_004073	ABIE53_004074	ABIE53_004075	ABIE53_004076
carbon source	shik 5mM	-0.1	-3.5	-0.1	-5.3	-1.7
soil extract	Shikimic Acid 5 mM in soil extract	-0.2	-2.3	-0.4	-4.1	-2.0
carbon source	shik 5mM	+0.0	-3.0	+0.0	-4.7	-1.5
carbon source	Shikimic Acid 5 mM (C)	-0.2	-1.7	-0.7	-4.1	-1.3
carbon source	shik 20mM	-0.2	-0.3	-0.4	-4.7	-2.2
soil extract	Shikimic Acid 5 mM in soil extract	-0.5	-3.0	-0.2	-2.5	-1.3
carbon source	shik 20mM	-0.1	-0.6	-0.4	-4.7	-1.3
carbon source	Shikimic Acid 5 mM (C)	+0.1	-2.2	-1.0	-2.7	-0.8
stress	RCH2_defined_glucose_5mM with Pyridoxal 1 mM	+0.2	-2.9	-0.1	-0.2	-0.2
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	-1.0	-1.0	-0.7	-0.7
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	-2.8	-0.2	+0.3	-0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	-0.9	-0.6	-0.7	-0.8
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	-0.1	-0.9	-0.3	-0.8	-0.7
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.6	-3.3	-0.0	-0.0	+0.2
stress	RCH2_defined_glucose_5mM with Chlorogenic 2 mM	-0.0	-0.6	-0.5	-1.0	-0.5
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.3	-0.7	-0.6	-0.8	-0.1
carbon source	Shikimic Acid (C)	+0.3	-1.1	-0.2	-1.0	-0.4
carbon source	Shikimic Acid (C)	+0.3	-0.9	-0.0	-1.2	-0.4
soil extract	Chlorogenic 5 mM in soil extract	-0.3	+0.1	-0.3	-0.9	-0.8
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	-1.2	-0.4	-0.4	-0.4
stress	RCH2_defined_glucose_5mM with Sucrose 5 mM	-0.7	-0.7	-0.3	+0.4	-0.4
stress	RCH2_defined_glucose_5mM with Pyridoxal 1 mM	+0.0	-2.0	+0.3	+0.1	-0.0
stress	RCH2_defined_glucose_5mM with caffeic 1 mM	+0.1	-0.9	+0.5	-0.8	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.3	-1.4	-0.0	-0.9	+0.9
carbon source	Acetylated xylan 10 g/L (C)	+0.6	+0.2	-1.1	-0.1	-0.3
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.3	-0.8	-0.3	+0.8	-0.2
soil extract	Indole-3-pyruvic 5 mM in soil extract	+0.2	-0.6	-0.3	+0.9	-0.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	-0.8	+0.4	+0.7	+0.3
carbon source	Uridine (C)	+0.2	+5.6	-0.2	+0.0	+0.6
carbon source	Uridine (C)	+0.1	+5.6	-0.2	+0.4	+0.7