Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_004005	ABIE53_004006	ABIE53_004007	ABIE53_004008	ABIE53_004009
carbon source	Glucuronamide (C)	-1.4	-0.8	-3.6	+0.2	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.9	-0.8	-2.2	-0.6	-0.8
carbon source	L-Lactate (C)	-0.9	-0.2	-3.9	-0.1	+0.3
plant outgrowth control	Plant outgrowth control	-0.7	-0.7	-3.0	+0.2	-0.5
carbon source	L-Tryptophan (C)	-0.5	-0.0	-3.9	-0.1	+0.0
r2a outgrowth control	R2A outgrowth control	+0.1	-0.5	-2.9	-0.7	-0.5
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.5	+0.8	-3.2	-0.2	-0.2
stress	RCH2_defined_glucose_5mM with Nerolidol 5 mM	-0.4	-0.1	-3.4	-0.3	+0.1
carbon source	D-Lactate (C)	+0.1	-0.6	-3.2	-0.1	-0.3
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	-0.1	-3.5	+0.1	-0.7
in planta	Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-1.6	-1.1	-1.5	+0.4	-0.2
soil extract	Sucrose 5 mM in soil extract	-0.4	-0.5	-2.8	-0.4	+0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.7	-0.2	-2.3	-0.8	-1.3
carbon source	D-Sorbitol (C)	-0.4	-0.5	-2.7	-0.5	+0.4
stress	RCH2_defined_glucose_5mM with caffeic 0.5 mM	+0.3	+0.0	-3.3	-0.3	-0.1
soil extract	Indole-3-pyruvic 5 mM in soil extract	-0.6	-0.0	-3.2	+0.0	+0.9
r2a no shaking	R2A no shaking	-1.1	-0.3	-2.6	+0.3	+0.9
nitrogen source	Xanthine 5 mM (N)	-0.9	-0.8	-1.8	+0.3	+0.5
stress	Growth in presence of limonene	+1.5	-0.1	-3.0	-0.3	-0.6
r2a outgrowth control	R2A outgrowth control	+0.6	-0.1	-3.3	+0.4	-0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.9	-0.6	-1.0	-0.6	+1.1
nitrogen source	histamine 2mM N source	-0.8	-0.5	+1.3	-0.9	-0.9
stress	RCH2_defined_glucose_5mM with Lumazine 5 mM	+0.9	+0.1	-1.6	+0.5	-1.6
nitrogen source	histamine 2mM N source	+0.9	+0.4	-2.3	-0.3	-0.4
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.2	-0.5	+1.2	+0.5	-1.0
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.1	-0.5	+2.1	+0.5	-1.1
motility_chemotaxis	Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut	-1.1	-0.7	+1.1	+0.3	+1.0
soil extract	Sucrose 5 mM in soil extract	-1.7	+0.6	+1.7	-0.5	+0.8
plant outgrowth control	Plant outgrowth control	-0.6	-0.5	+2.4	+0.4	+0.6
carbon source	D-Gluconic Acid (C)	+0.9	-0.3	+1.7	-0.3	+0.9