Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_003984 and ABIE53_003985 are separated by 48 nucleotidesABIE53_003985 and ABIE53_003986 are separated by 156 nucleotidesABIE53_003986 and ABIE53_003987 are separated by 349 nucleotidesABIE53_003987 and ABIE53_003988 are separated by 18 nucleotides ABIE53_003984: ABIE53_003984 - ACS family hexuronate transporter-like MFS transporter, at 139,644 to 140,933 _003984 ABIE53_003985: ABIE53_003985 - LacI family transcriptional regulator, at 140,982 to 141,974 _003985 ABIE53_003986: ABIE53_003986 - uronate dehydrogenase, at 142,131 to 142,982 _003986 ABIE53_003987: ABIE53_003987 - 4-hydroxybenzoate polyprenyltransferase, at 143,332 to 144,753 _003987 ABIE53_003988: ABIE53_003988 - small multidrug resistance pump, at 144,772 to 145,128 _003988
Group Condition ABIE53_003984 ABIE53_003985 ABIE53_003986 ABIE53_003987 ABIE53_003988
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -1.0 -1.8 +0.0 -2.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -1.4 -1.4 -0.6 -1.0
plant outgrowth control Plant outgrowth control +0.1 -0.4 -0.8 -0.6 -2.6
plant outgrowth control Plant outgrowth control -0.1 -1.0 +0.6 -0.6 -3.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -1.6 +0.0 -0.2 -2.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -1.2 -0.3 -0.3 -2.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -1.8 +0.9 -0.4 -2.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -1.2 +0.0 -0.4 -2.5
stress R2A with Isopropyl alcohol 21 g/L -0.4 -0.9 -0.8 +0.4 -1.9
r2a outgrowth control R2A outgrowth control +0.1 -0.7 -0.7 +0.0 -2.4
carbon source Adenosine (C) -0.3 -0.2 +0.6 -0.1 -3.6
carbon source homovanillyl alcohol and Ethanols +0.0 +0.2 +0.0 -0.2 -3.4
stress M9 with 3-methyl-3-butenol 4.5 g/L +0.1 +0.4 -2.1 -0.2 -1.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -2.4 +0.2 -0.3 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.9 +0.6 -0.4 -1.9
carbon source Glucuronamide (C) -3.7 +0.8 +0.2 -0.4 +0.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +1.1 -3.0 -0.6 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.7 -0.7 -0.6 -0.8 +1.2
carbon source L-Tryptophan (C) +0.3 -0.7 +1.1 -0.4 -1.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.5 -1.1 -1.7 +0.0 +2.0
phage Burk1_10 -0.2 -0.0 +1.5 +0.0 -2.4
carbon source Laminarin 10 g/L (C) +0.2 +0.1 +1.1 -0.2 -2.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.9 +0.8 -0.3 -2.5
carbon source Glucuronamide (C) -2.5 +1.0 +0.4 +0.0 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -0.9 +1.2 -0.6 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -1.7 -0.0 -0.3 +1.6
carbon source D-Sorbitol (C) -0.4 -0.5 +2.4 -0.5 -0.0
carbon source Tween 20 (C) -0.1 -1.7 +2.4 -0.2 +1.4
carbon source D-Glucose (C) -0.1 -0.5 +2.5 -0.2 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +1.5 +0.7 -0.5 +1.1
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