Fitness for 5 genes in Paraburkholderia graminis OAS925

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 488 experiments or choose conditions or try the comparative fitness browser

500 ntABIE53_003973 and ABIE53_003974 are separated by 357 nucleotidesABIE53_003974 and ABIE53_003975 are separated by 112 nucleotidesABIE53_003975 and ABIE53_003976 are separated by 55 nucleotidesABIE53_003976 and ABIE53_003977 are separated by 92 nucleotides ABIE53_003973: ABIE53_003973 - 3-oxoadipate enol-lactonase, at 126,063 to 126,899 _003973 ABIE53_003974: ABIE53_003974 - NitT/TauT family transport system permease protein, at 127,257 to 128,048 _003974 ABIE53_003975: ABIE53_003975 - NitT/TauT family transport system substrate-binding protein, at 128,161 to 129,153 _003975 ABIE53_003976: ABIE53_003976 - NitT/TauT family transport system ATP-binding protein, at 129,209 to 130,045 _003976 ABIE53_003977: ABIE53_003977 - putative porin, at 130,138 to 131,229 _003977
Group Condition ABIE53_003973 ABIE53_003974 ABIE53_003975 ABIE53_003976 ABIE53_003977
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -4.3 -0.6 +0.3 -0.5 -0.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -4.2 -0.3 +0.2 -0.0 -1.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.7 -0.2 +0.1 -2.1 -1.2
plant outgrowth control Plant outgrowth control -4.8 +0.4 +0.3 -0.2 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -4.2 -0.0 -0.4 -0.6 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.6 -0.5 +0.5 -2.1 +0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.5 -0.4 +0.0 -2.5 -0.1
r2a outgrowth control R2A outgrowth control -1.7 -0.4 -0.5 -1.9 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.5 -0.1 +0.2 -1.9 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.0 +0.3 -0.1 -1.3 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.0 -0.7 -0.7 -0.9 +0.5
r2a no shaking R2A no shaking -1.8 +0.0 +0.2 -2.7 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.3 +0.3 -0.4 -0.5 -0.8
stress R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM -0.4 -0.6 -1.0 -2.4 +0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.3 -0.1 +0.2 -1.4 -1.0
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.9 -2.1 -0.0 +0.3 +0.4
stress RCH2_defined_glucose_5mM with Adenine 4 mM -1.6 +0.6 -0.8 -1.3 +0.2
carbon source Shikimic Acid 5 mM (C) -2.4 -0.0 +0.8 -1.1 -0.2
r2a outgrowth control R2A outgrowth control -0.8 +0.2 +0.5 -1.5 -1.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.9 +0.0 +0.1 +0.9 -1.1
stress RCH2_defined_glucose_5mM with Chlorogenic 0.5 mM -2.7 +0.4 +0.4 +0.4 -0.3
carbon source L-Tryptophan (C) +1.2 -0.1 -0.6 -1.7 -0.6
stress RCH2_defined_glucose_5mM with Adenine 5 mM -1.0 -0.3 -1.3 +1.0 +0.7
carbon source Acetylated xylan 10 g/L (C) -1.5 +0.3 +1.5 -0.4 +0.3
stress R2A with Chloride 200 mM +1.2 +0.2 +1.3 -1.3 -0.8
stress R2A with N-decanoyl-DL-Homoserine lactone 10 uM +1.1 +0.7 -0.1 -1.5 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.8 -0.9 +0.1 -1.0 +0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.3 +0.5 -0.8 -0.7 +0.9
stress R2A with Chloride 200 mM +1.3 +0.3 +0.6 +1.5 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.5 -0.1 +1.1 +1.5 -0.5
remove
ABIE53_003973
plot		 remove
ABIE53_003974
plot		 remove
ABIE53_003975		 remove
ABIE53_003976
plot		 remove
ABIE53_003977
plot